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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
30502R-1 |
Symbol |
CG30502 |
Full Name |
CG30502 |
CG No |
CG30502 |
Old CG No |
CG30502 |
Synonyms |
CG1645, CG1642, CG30502 |
Accession No (Link to NCBI) |
NM_136435.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Carvalho M, Schwudke D, Sampaio JL, Palm W, Riezman I, Dey G, Gupta GD, Mayor S, Riezman H, Shevchenko A, Kurzchalia TV, Eaton S. Survival strategies of a sterol auxotroph. Development (2010) 137(21) 3675-85
[
PubMed ID = 20940226
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCAAAGGAAGCGGAGTCGAACG |
Primer Seq. 3' |
aatctagaggtaccTGGTATCCAGAACAGGGGCAC |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CAAAGGAAGC GGAGTCGAAC GACAAGTTCA TAGTAAAGTA TCGCCAGCAG TATTACGATT
0061 TGTCCAGGTT TATGCACAAG CATCCGGGAG GCATAAACAC ACTCAAAGGT CTCAACAGCG
0121 GGGACATGAC AGCTCGCTTC CTAAAAGGCG CCGCCACATT CGGATGCGGC CATGTACTTG
0181 ATGAGGGAGT ACAAAATCGA TCCAGAGGAC TCTCGGAAAC CAAAGTCGAG CCAAAGGGAA
0241 ACGTTGCATC ACGATGAAGA TGGGACTTTG CGACAACGGC CCAGGGAAAC GGAGGACAAG
0301 AACAATAACC AGGTGGACGA TAGTATGGAG CACCTAGTGG ACTGGTCTAA GGCAATGCTT
0361 CCGCAGATAG CTAACATAAC GGATTGCTAC GATGAGTGGG TTCACAAGCC GGTGGACAGG
0421 CCACTGCGTC TCTTTGACCC TTGGTACTTG GAGATGTGCA CCAAGACGCC CTGGTgGCTG
0481 GTGCCCCTGT TCTGGATACC A |
in silico PCR Fragment |
0001 CAAAGGAAGC GGAGTCGAAC GACAAGTTCA TAGTAAAGTA TCGCCAGCAG TATTACGATT
0061 TGTCCAGGTT TATGCACAAG CATCCGGGAG GCATAAACAC ACTCAAAGGT CTCAACAGCG
0121 GGGACATGAC AGCTCGCTTC CT-AAAGGCG CCGCCACATT CGGATGCGGC CATGTACTTG
0181 ATGAGGGAGT ACAAAATCGA TCCAGAGGAC TCTCGGAAAC CAAAGTCGAG CCAAAGGGAA
0241 ACGTTGCATC ACGATGAAGA TGGGACTTTG CGACAACGGC CCAGGGAAAC GGAGGACAAG
0301 AACAATAACC AGGTGGACGA TAGTATGGAG CACCTAGTGG ACTGGTCTAA GGCAATGCTT
0361 CCGCAGATAG CTAACATAAC GGATTGCTAC GATGAGTGGG TTCACAAGCC GGTGGACAGG
0421 CCACTGCGTC TCTTTGACCC TTGGTACTTG GAGATGTGCA CCAAGACGCC CTGGTGGCTG
0481 GTGCCCCTGT TCTGGATACC A |
Assemble Data |
30502R-1.IR_full 1 CAAAGGAAGCGGAGTCGAACGACAAGTTCATAGTAAAGTATCGCCAGCAGTATTACGATT 60
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30502R-1.in silico 1 CAAAGGAAGCGGAGTCGAACGACAAGTTCATAGTAAAGTATCGCCAGCAGTATTACGATT 60
30502R-1.IR_full 61 TGTCCAGGTTTATGCACAAGCATCCGGGAGGCATAAACACACTCAAAGGTCTCAACAGCG 120
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30502R-1.in silico 61 TGTCCAGGTTTATGCACAAGCATCCGGGAGGCATAAACACACTCAAAGGTCTCAACAGCG 120
30502R-1.IR_full 121 GGGACATGACAGCTCGCTTCCTAAAAGGCGCCGCCACATTCGGATGCGGCCATGTACTTG 180
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30502R-1.in silico 121 GGGACATGACAGCTCGCTTCCT-AAAGGCGCCGCCACATTCGGATGCGGCCATGTACTTG 180
30502R-1.IR_full 181 ATGAGGGAGTACAAAATCGATCCAGAGGACTCTCGGAAACCAAAGTCGAGCCAAAGGGAA 240
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30502R-1.in silico 181 ATGAGGGAGTACAAAATCGATCCAGAGGACTCTCGGAAACCAAAGTCGAGCCAAAGGGAA 240
30502R-1.IR_full 241 ACGTTGCATCACGATGAAGATGGGACTTTGCGACAACGGCCCAGGGAAACGGAGGACAAG 300
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30502R-1.in silico 241 ACGTTGCATCACGATGAAGATGGGACTTTGCGACAACGGCCCAGGGAAACGGAGGACAAG 300
30502R-1.IR_full 301 AACAATAACCAGGTGGACGATAGTATGGAGCACCTAGTGGACTGGTCTAAGGCAATGCTT 360
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30502R-1.in silico 301 AACAATAACCAGGTGGACGATAGTATGGAGCACCTAGTGGACTGGTCTAAGGCAATGCTT 360
30502R-1.IR_full 361 CCGCAGATAGCTAACATAACGGATTGCTACGATGAGTGGGTTCACAAGCCGGTGGACAGG 420
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30502R-1.in silico 361 CCGCAGATAGCTAACATAACGGATTGCTACGATGAGTGGGTTCACAAGCCGGTGGACAGG 420
30502R-1.IR_full 421 CCACTGCGTCTCTTTGACCCTTGGTACTTGGAGATGTGCACCAAGACGCCCTGGTGGCTG 480
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30502R-1.in silico 421 CCACTGCGTCTCTTTGACCCTTGGTACTTGGAGATGTGCACCAAGACGCCCTGGTGGCTG 480
30502R-1.IR_full 481 GTGCCCCTGTTCTGGATACCA 501
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30502R-1.in silico 481 GTGCCCCTGTTCTGGATACCA 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_136435.2 |
CG30502-RA (CG30502), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_167487.1 |
CG32577-RA (disco-r), mRNA |
0 |
0 |
1 |
6 |
3 |
NM_170089.1 |
CG10367-RA, transcript variant A (Hmgcr), mRNA |
0 |
0 |
1 |
6 |
3 |
NM_206548.1 |
CG10367-RB, transcript variant B (Hmgcr), mRNA |
0 |
0 |
1 |
5 |
2 |
NM_079091.2 |
CG12781-RA, transcript variant A (nahoda), mRNA |
0 |
0 |
1 |
5 |
2 |
NM_166569.1 |
CG12781-RB, transcript variant B (nahoda), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_133104.2 |
CG7282-RA (CG7282), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_170536.2 |
CG2048-RB, transcript variant B (dco), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_170535.1 |
CG2048-RA, transcript variant A (dco), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_079863.2 |
CG2048-RC, transcript variant C (dco), mRNA |
0 |
0 |
1 |
3 |
1 |
NM_143141.2 |
CG4548-RB, transcript variant B (XNP), mRNA |
0 |
0 |
1 |
3 |
1 |
NM_170228.1 |
CG4548-RA, transcript variant A (XNP), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_079859.2 |
CG1438-RA (Cyp4c3), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_170028.1 |
CG31159-RA (CG31159), mRNA |
0 |
0 |
0 |
7 |
3 |
NM_080042.2 |
CG5827-RA, transcript variant A (RpL37A), mRNA |
0 |
0 |
0 |
6 |
5 |
NM_137945.1 |
CG30414-RA (CG30414), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_136707.2 |
CG1371-RA (CG1371), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_167926.2 |
CG12026-RB, transcript variant B (CG12026), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_139417.2 |
CG12026-RA, transcript variant A (CG12026), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_169293.1 |
CG8208-RA, transcript variant A (MBD-like), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_141650.2 |
CG8208-RB, transcript variant B (MBD-like), mRNA |
0 |
0 |
0 |
4 |
10 |
NM_136450.2 |
CG2140-RB, transcript variant B (Cyt-b5), mRNA |
0 |
0 |
0 |
4 |
10 |
NM_165540.2 |
CG2140-RA, transcript variant A (Cyt-b5), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_078530.2 |
CG11202-RA (org-1), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_079668.2 |
CG7467-RB, transcript variant B (osa), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_169775.1 |
CG7467-RA, transcript variant A (osa), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_078614.3 |
CG8544-RB, transcript variant B (sd), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_169052.1 |
CG2666-RB, transcript variant B (kkv), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_137223.1 |
CG8302-RA (Cyp4aa1), mRNA |
0 |
0 |
0 |
3 |
5 |
NM_206727.1 |
CG8544-RC, transcript variant C (sd), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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