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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 2720R-3 
 Symbol Hop  Full Name Hsp70/Hsp90 organizing protein homolog 
 CG No CG2720  Old CG No CG2720 
 Synonyms dHop, dmSTI1, EP(2)0418, dhop, dSTI1, l(2)k00616, Sti1, CG2720, Hop 
 Accession No (Link to NCBI) NM_058006.3 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Arsham AM, Neufeld TP.
A genetic screen in Drosophila reveals novel cytoprotective functions of the autophagy-lysosome pathway.
PLoS One (2009) 4(6) e6068 [ PubMed ID = 19562034 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGGCGCTCAGTGCCGAGAAGTT 
 Primer Seq. 3'
aatctagaggtaccCCTTCTCCTTCCTCGCGAAGT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GGCGCTCAGT GCCGAGAAGT TCTGACGAGN CGGTgGNGGC GTANACAGAG GCCATCGCTC 
0061 TGGACGACCA GAACCATGTG CTCTACAGCA ACCGTTCGGC GGCATTCGCC AAGGCTGGAA 
0121 AGTTCCANGG AGGCGCTAGA AGATGCGGAG AAGACCATTC AGCTTAATCC CCACCTGGCC 
0181 TAAGGCCGTT ACCTCNCGCA AAGGADCTNG CCGCTGCGGG TCTGAATGAA CTTTATGAAN 
0241 GGCCTTCGAA GCGTACAACG AGGGTCTCAA GTACNATCCC ACGAATGCTA TNACTCCTGC 
0301 AAGGCCGCAT GGAAACTACT GCCTCGGCTC TGAGCTTTAT GCAATCGCAG GGGGATATAC 
0361 CCATGGACGT TGATCCCCAG CAGGCACGCA GCCGCAGGGC TCcaTCGCCA NCGCCGGCGA 
0421 AACCgGCTGA GCCCCCAAAG CCCNCTGAAC CTCGGGTAGA GGACATGACT GAGGAGCAGA 
0481 AGAATAAGTA CTTCGCGAGG AAGGAGAAGG  
 in silico PCR Fragment
0001 GGCGCTCAGT GCCGAGAAGT TC-GACGAGG CGGTGGCGGC GTACACAGAG GCCATCGCTC 
0061 TGGACGACCA GAACCATGTG CTCTACAGCA ACCGTTCGGC GGCATTCGCC AAGGCTGGAA 
0121 AGTTCCA-GG AGGCGCTAGA AGATGCGGAG AAGACCATTC AGCTTAAT-C CCACCTGGCC 
0181 TAAGG--GTT -ACTCACGCA AAGGAGCT-G CCGCTGCGGG TCTGAATG-A CTTTATGAA- 
0241 GGCCTTCGAA GCGTACAACG AGGGTCTCAA GTACGATCCC ACGAATGCTA T-ACTCCTGC 
0301 AAGGCCGCAT GGAAACTACT GCCTCGGCTC TGAGCTTTAT GCAATCGCAG GGGGATATAC 
0361 CCATGGACGT TGATCCCCAG CAGGCACGCA GCCGCAGGGC TCCATCGCCA CCGCCGGCGA 
0421 AACCGGCTGA GCCCCCAAAG CCCGCTGAAC CTCGGGTAGA GGACATGACT GAGGAGCAGA 
0481 AGAATAAGTA CTTCGCGAGG AAGGAGAAGG  
 Assemble Data

2720R-3.IR_full       1   GGCGCTCAGTGCCGAGAAGTTCTGACGAGNCGGTGGNGGCGTANACAGAGGCCATCGCTC 60
                          |||||||||||||||||||||| |||||| |||||| |||||| ||||||||||||||||
2720R-3.in silico     1   GGCGCTCAGTGCCGAGAAGTTC-GACGAGGCGGTGGCGGCGTACACAGAGGCCATCGCTC 60


2720R-3.IR_full       61  TGGACGACCAGAACCATGTGCTCTACAGCAACCGTTCGGCGGCATTCGCCAAGGCTGGAA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2720R-3.in silico     61  TGGACGACCAGAACCATGTGCTCTACAGCAACCGTTCGGCGGCATTCGCCAAGGCTGGAA 120


2720R-3.IR_full       121 AGTTCCANGGAGGCGCTAGAAGATGCGGAGAAGACCATTCAGCTTAATCCCCACCTGGCC 180
                          ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
2720R-3.in silico     121 AGTTCCA-GGAGGCGCTAGAAGATGCGGAGAAGACCATTCAGCTTAAT-CCCACCTGGCC 180


2720R-3.IR_full       181 TAAGGCCGTTACCTCNCGCAAAGGADCTNGCCGCTGCGGGTCTGAATGAACTTTATGAAN 240
                          |||||  |||  ||| ||||||||| || ||||||||||||||||||| |||||||||| 
2720R-3.in silico     181 TAAGG--GTT-ACTCACGCAAAGGAGCT-GCCGCTGCGGGTCTGAATG-ACTTTATGAA- 240


2720R-3.IR_full       241 GGCCTTCGAAGCGTACAACGAGGGTCTCAAGTACNATCCCACGAATGCTATNACTCCTGC 300
                          |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
2720R-3.in silico     241 GGCCTTCGAAGCGTACAACGAGGGTCTCAAGTACGATCCCACGAATGCTAT-ACTCCTGC 300


2720R-3.IR_full       301 AAGGCCGCATGGAAACTACTGCCTCGGCTCTGAGCTTTATGCAATCGCAGGGGGATATAC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2720R-3.in silico     301 AAGGCCGCATGGAAACTACTGCCTCGGCTCTGAGCTTTATGCAATCGCAGGGGGATATAC 360


2720R-3.IR_full       361 CCATGGACGTTGATCCCCAGCAGGCACGCAGCCGCAGGGCTCCATCGCCANCGCCGGCGA 420
                          |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
2720R-3.in silico     361 CCATGGACGTTGATCCCCAGCAGGCACGCAGCCGCAGGGCTCCATCGCCACCGCCGGCGA 420


2720R-3.IR_full       421 AACCGGCTGAGCCCCCAAAGCCCNCTGAACCTCGGGTAGAGGACATGACTGAGGAGCAGA 480
                          ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
2720R-3.in silico     421 AACCGGCTGAGCCCCCAAAGCCCGCTGAACCTCGGGTAGAGGACATGACTGAGGAGCAGA 480


2720R-3.IR_full       481 AGAATAAGTACTTCGCGAGGAAGGAGAAGG 510
                          ||||||||||||||||||||||||||||||
2720R-3.in silico     481 AGAATAAGTACTTCGCGAGGAAGGAGAAGG 510

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_058006.3  CG2720-RA (Hop), mRNA 
0.41   11  NM_166019.1  CG18076-RH, transcript variant H (shot), mRNA 
0.41   10  NM_166015.1  CG18076-RG, transcript variant G (shot), mRNA 
0.41   10  NM_166016.1  CG18076-RB, transcript variant B (shot), mRNA 
0.41   10  NM_166017.1  CG18076-RE, transcript variant E (shot), mRNA 
0.41   10  NM_079009.2  CG18076-RA, transcript variant A (shot), mRNA 
0.41   10  NM_166018.1  CG18076-RC, transcript variant C (shot), mRNA 
0.2   NM_079036.3  CG7773-RA (fidipidine), mRNA 
0   NM_142705.1  CG5919-RA (CG5919), mRNA 
0   NM_130621.2  CG4061-RA (CG4061), mRNA 
0   NM_079120.2  CG4356-RB, transcript variant B (mAcR-60C), mRNA 
0   NM_166668.1  CG4356-RA, transcript variant A (mAcR-60C), mRNA 
0   NM_001015098.1  CG40264-PA.3 (CG40264), mRNA 
0   NM_137589.2  CG16716-RB, transcript variant B (CG16716), mRNA 
0   NM_166371.1  CG16716-RA, transcript variant A (CG16716), mRNA 
0   10  NM_141642.1  CG9373-RA (CG9373), mRNA 
0   NM_001038728.1  CG4293-RC, transcript variant C (CG4293), mRNA 
0   NM_130491.3  CG4293-RA, transcript variant A (CG4293), mRNA 
0   NM_166847.2  CG4293-RB, transcript variant B (CG4293), mRNA 
0   NM_001038727.1  CG4293-RD, transcript variant D (CG4293), mRNA 
0   14  NM_132773.2  CG5627-RA (rab3-GEF), mRNA 
0   NM_143705.2  CG12225-RA (Spt6), mRNA 
0   NM_001032055.1  CG17291-RB, transcript variant B (Pp2A-29B), mRNA 
0   NM_001032056.1  CG17291-RA, transcript variant A (Pp2A-29B), mRNA 
0   NM_078717.2  CG3696-RA, transcript variant A (kis), mRNA 
0   NM_080384.2  CG12085-RA, transcript variant A (pUf68), mRNA 
0   NM_132484.2  CG11750-RA (CG11750), mRNA 
0   NM_167880.1  CG12085-RB, transcript variant B (pUf68), mRNA 
0   NM_167882.1  CG12085-RD, transcript variant D (pUf68), mRNA 
0   NM_167881.1  CG12085-RC, transcript variant C (pUf68), mRNA 

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