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NIG-RNAi Strains Detail |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
2720R-1 |
Symbol |
Hop |
Full Name |
Hsp70/Hsp90 organizing protein homolog |
CG No |
CG2720 |
Old CG No |
CG2720 |
Synonyms |
dHop, dmSTI1, EP(2)0418, dhop, dSTI1, l(2)k00616, Sti1, CG2720, Hop |
Accession No (Link to NCBI) |
NM_058006.3 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Dorogova NV, Khruscheva AS, Galimova IA, Oshchepkov DY, Maslov DE, Shvedkina ED, Akhmetova KA, Fedorova SA. Migration of primordial germline cells is negatively regulated by surrounding somatic cells during early embryogenesis in Drosophila melanogaster. Vavilovskii Zhurnal Genet Selektsii (2020) 24(5) 525-532
[
PubMed ID = 33659837
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
Arsham AM, Neufeld TP. A genetic screen in Drosophila reveals novel cytoprotective functions of the autophagy-lysosome pathway. PLoS One (2009) 4(6) e6068
[
PubMed ID = 19562034
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGGCGCTCAGTGCCGAGAAGTT |
Primer Seq. 3' |
aatctagaggtaccCCTTCTCCTTCCTCGCGAAGT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GGCGCTCAGT GCCGAGAAGT TCTGACGAGN CGGTgGNGGC GTANACAGAG GCCATCGCTC
0061 TGGACGACCA GAACCATGTG CTCTACAGCA ACCGTTCGGC GGCATTCGCC AAGGCTGGAA
0121 AGTTCCANGG AGGCGCTAGA AGATGCGGAG AAGACCATTC AGCTTAATCC CCACCTGGCC
0181 TAAGGCCGTT ACCTCNCGCA AAGGADCTNG CCGCTGCGGG TCTGAATGAA CTTTATGAAN
0241 GGCCTTCGAA GCGTACAACG AGGGTCTCAA GTACNATCCC ACGAATGCTA TNACTCCTGC
0301 AAGGCCGCAT GGAAACTACT GCCTCGGCTC TGAGCTTTAT GCAATCGCAG GGGGATATAC
0361 CCATGGACGT TGATCCCCAG CAGGCACGCA GCCGCAGGGC TCcaTCGCCA NCGCCGGCGA
0421 AACCgGCTGA GCCCCCAAAG CCCNCTGAAC CTCGGGTAGA GGACATGACT GAGGAGCAGA
0481 AGAATAAGTA CTTCGCGAGG AAGGAGAAGG |
in silico PCR Fragment |
0001 GGCGCTCAGT GCCGAGAAGT TC-GACGAGG CGGTGGCGGC GTACACAGAG GCCATCGCTC
0061 TGGACGACCA GAACCATGTG CTCTACAGCA ACCGTTCGGC GGCATTCGCC AAGGCTGGAA
0121 AGTTCCA-GG AGGCGCTAGA AGATGCGGAG AAGACCATTC AGCTTAAT-C CCACCTGGCC
0181 TAAGG--GTT -ACTCACGCA AAGGAGCT-G CCGCTGCGGG TCTGAATG-A CTTTATGAA-
0241 GGCCTTCGAA GCGTACAACG AGGGTCTCAA GTACGATCCC ACGAATGCTA T-ACTCCTGC
0301 AAGGCCGCAT GGAAACTACT GCCTCGGCTC TGAGCTTTAT GCAATCGCAG GGGGATATAC
0361 CCATGGACGT TGATCCCCAG CAGGCACGCA GCCGCAGGGC TCCATCGCCA CCGCCGGCGA
0421 AACCGGCTGA GCCCCCAAAG CCCGCTGAAC CTCGGGTAGA GGACATGACT GAGGAGCAGA
0481 AGAATAAGTA CTTCGCGAGG AAGGAGAAGG |
Assemble Data |
2720R-1.IR_full 1 GGCGCTCAGTGCCGAGAAGTTCTGACGAGNCGGTGGNGGCGTANACAGAGGCCATCGCTC 60
|||||||||||||||||||||| |||||| |||||| |||||| ||||||||||||||||
2720R-1.in silico 1 GGCGCTCAGTGCCGAGAAGTTC-GACGAGGCGGTGGCGGCGTACACAGAGGCCATCGCTC 60
2720R-1.IR_full 61 TGGACGACCAGAACCATGTGCTCTACAGCAACCGTTCGGCGGCATTCGCCAAGGCTGGAA 120
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2720R-1.in silico 61 TGGACGACCAGAACCATGTGCTCTACAGCAACCGTTCGGCGGCATTCGCCAAGGCTGGAA 120
2720R-1.IR_full 121 AGTTCCANGGAGGCGCTAGAAGATGCGGAGAAGACCATTCAGCTTAATCCCCACCTGGCC 180
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2720R-1.in silico 121 AGTTCCA-GGAGGCGCTAGAAGATGCGGAGAAGACCATTCAGCTTAAT-CCCACCTGGCC 180
2720R-1.IR_full 181 TAAGGCCGTTACCTCNCGCAAAGGADCTNGCCGCTGCGGGTCTGAATGAACTTTATGAAN 240
||||| ||| ||| ||||||||| || ||||||||||||||||||| ||||||||||
2720R-1.in silico 181 TAAGG--GTT-ACTCACGCAAAGGAGCT-GCCGCTGCGGGTCTGAATG-ACTTTATGAA- 240
2720R-1.IR_full 241 GGCCTTCGAAGCGTACAACGAGGGTCTCAAGTACNATCCCACGAATGCTATNACTCCTGC 300
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
2720R-1.in silico 241 GGCCTTCGAAGCGTACAACGAGGGTCTCAAGTACGATCCCACGAATGCTAT-ACTCCTGC 300
2720R-1.IR_full 301 AAGGCCGCATGGAAACTACTGCCTCGGCTCTGAGCTTTATGCAATCGCAGGGGGATATAC 360
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2720R-1.in silico 301 AAGGCCGCATGGAAACTACTGCCTCGGCTCTGAGCTTTATGCAATCGCAGGGGGATATAC 360
2720R-1.IR_full 361 CCATGGACGTTGATCCCCAGCAGGCACGCAGCCGCAGGGCTCCATCGCCANCGCCGGCGA 420
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2720R-1.in silico 361 CCATGGACGTTGATCCCCAGCAGGCACGCAGCCGCAGGGCTCCATCGCCACCGCCGGCGA 420
2720R-1.IR_full 421 AACCGGCTGAGCCCCCAAAGCCCNCTGAACCTCGGGTAGAGGACATGACTGAGGAGCAGA 480
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2720R-1.in silico 421 AACCGGCTGAGCCCCCAAAGCCCGCTGAACCTCGGGTAGAGGACATGACTGAGGAGCAGA 480
2720R-1.IR_full 481 AGAATAAGTACTTCGCGAGGAAGGAGAAGG 510
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2720R-1.in silico 481 AGAATAAGTACTTCGCGAGGAAGGAGAAGG 510
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_058006.3 |
CG2720-RA (Hop), mRNA |
0.41 |
2 |
3 |
4 |
11 |
NM_166019.1 |
CG18076-RH, transcript variant H (shot), mRNA |
0.41 |
2 |
3 |
4 |
10 |
NM_166015.1 |
CG18076-RG, transcript variant G (shot), mRNA |
0.41 |
2 |
3 |
4 |
10 |
NM_166016.1 |
CG18076-RB, transcript variant B (shot), mRNA |
0.41 |
2 |
3 |
4 |
10 |
NM_166017.1 |
CG18076-RE, transcript variant E (shot), mRNA |
0.41 |
2 |
3 |
4 |
10 |
NM_079009.2 |
CG18076-RA, transcript variant A (shot), mRNA |
0.41 |
2 |
3 |
4 |
10 |
NM_166018.1 |
CG18076-RC, transcript variant C (shot), mRNA |
0.2 |
1 |
5 |
3 |
3 |
NM_079036.3 |
CG7773-RA (fidipidine), mRNA |
0 |
0 |
3 |
8 |
2 |
NM_142705.1 |
CG5919-RA (CG5919), mRNA |
0 |
0 |
3 |
2 |
5 |
NM_130621.2 |
CG4061-RA (CG4061), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_079120.2 |
CG4356-RB, transcript variant B (mAcR-60C), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_166668.1 |
CG4356-RA, transcript variant A (mAcR-60C), mRNA |
0 |
0 |
2 |
4 |
3 |
NM_001015098.1 |
CG40264-PA.3 (CG40264), mRNA |
0 |
0 |
2 |
2 |
4 |
NM_137589.2 |
CG16716-RB, transcript variant B (CG16716), mRNA |
0 |
0 |
2 |
2 |
4 |
NM_166371.1 |
CG16716-RA, transcript variant A (CG16716), mRNA |
0 |
0 |
1 |
10 |
5 |
NM_141642.1 |
CG9373-RA (CG9373), mRNA |
0 |
0 |
1 |
5 |
2 |
NM_001038728.1 |
CG4293-RC, transcript variant C (CG4293), mRNA |
0 |
0 |
1 |
5 |
2 |
NM_130491.3 |
CG4293-RA, transcript variant A (CG4293), mRNA |
0 |
0 |
1 |
5 |
2 |
NM_166847.2 |
CG4293-RB, transcript variant B (CG4293), mRNA |
0 |
0 |
1 |
5 |
2 |
NM_001038727.1 |
CG4293-RD, transcript variant D (CG4293), mRNA |
0 |
0 |
1 |
4 |
14 |
NM_132773.2 |
CG5627-RA (rab3-GEF), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_143705.2 |
CG12225-RA (Spt6), mRNA |
0 |
0 |
1 |
4 |
5 |
NM_001032055.1 |
CG17291-RB, transcript variant B (Pp2A-29B), mRNA |
0 |
0 |
1 |
4 |
5 |
NM_001032056.1 |
CG17291-RA, transcript variant A (Pp2A-29B), mRNA |
0 |
0 |
1 |
3 |
9 |
NM_078717.2 |
CG3696-RA, transcript variant A (kis), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_080384.2 |
CG12085-RA, transcript variant A (pUf68), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_132484.2 |
CG11750-RA (CG11750), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_167880.1 |
CG12085-RB, transcript variant B (pUf68), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_167882.1 |
CG12085-RD, transcript variant D (pUf68), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_167881.1 |
CG12085-RC, transcript variant C (pUf68), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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++ |
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DB |
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+ |
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DC |
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++ |
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DM |
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+ |
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VM |
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VB |
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