|
Notice:
|
|
Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
|
|
| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
|
| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
18061R-2 |
| Symbol |
Pax |
Full Name |
Paxillin |
| CG No |
CG31794 |
Old CG No |
CG18061 |
| Synonyms |
CG31794, DPxn, DPaxillin, DPxn37, PDLP, CG18576, Dpax, CT42454, CT40481, CG18061, Pax |
| Accession No (Link to NCBI) |
NM_078877.3 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Álvarez-Fernández C, Tamirisa S, Prada F, Chernomoretz A, Podhajcer O, Blanco E, Martín-Blanco E.
Identification and functional analysis of healing regulators in Drosophila.
PLoS Genet (2015) 11(2) e1004965
[
PubMed ID = 25647511
]
[
RRC reference
]
Peters NC, Thayer NH, Kerr SA, Tompa M, Berg CA.
Following the 'tracks': Tramtrack69 regulates epithelial tube expansion in the Drosophila ovary through Paxillin, Dynamin, and the homeobox protein Mirror.
Dev Biol (2013) 378(2) 154-69
[
PubMed ID = 23545328
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgCCCTCAGCGACTGTTTCAAAG |
| Primer Seq. 3' |
aatctagaggtaccGATGTGAGCATTGTCCAGTTC |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 CCCTCAGCGA CTGTTTCAAA GTGGGCGAGT TCGAGCGACG TCTGGATGCT CTATTAGCCG
0061 ACCTGCAAAA CAGTGTGCCA GGCCAGCCGC AGCAACCTCA GCCGCAATAT GGAACTGTCC
0121 AGCCCAAACA TCAAGCTCTG CAGCAACAGC AGTTTGTGGA CAACACTCCA GGTTATGGAA
0181 GTCTCAGGGG CAAAGCCCAG CCCCAGGTGT ATCAAGAGCA CTACAGCGTA GAGACACGCT
0241 CCCCAACGNC TGGACATGAT TTTAATGGCT CCCTCAACGA CTCCCGGGAT ACGCTAACCA
0301 GGGATCGTTG CCACGTCAGG CGGCGGGNGC AAGCACAGGA CTCTCAGAAC TGGACTCCTT
0361 GCtGCAGGAT CTGCAGAAAA TCGATGTACC GGTCAACTAC AGTACTCCAG TCTCGAAATA
0421 CAATACGATG AATAGTTATG CCACCGTGGA GGAGCGTCCT TCAGTGGACA GCCTGCTGAA
0481 AGAACTGGAC AATGCTCACA TC |
| in silico PCR Fragment |
0001 CCCTCAGCGA CTGTTTCAAA GTGGGCGAGT TCGAGCGACG TCTGGATGCT CTATTAGCCG
0061 ACCTGCAAAA CAGTGTGCCA GGCCAGCCGC AGCAACCTCA GCCGCAATAT GGAACTGTCC
0121 AGCCCAAACA TCAAGCTCTG CAGCAACAGC AGTTTGTGGA CAACACTCCA GGTTATGGAA
0181 GTCTCAGGGG CAAAGCCCAG CCCCAGGTGT ATCAAGAGCA CTACAGCGTA GAGACACGCT
0241 CCCCAACGGC TGGACATGAT TTTAATGGCT -CCTCAACGA CT-CCGGGAT ACGCTAACCA
0301 GGGATCGTTG CCACGTCAGG CGGCGGGTGC AAGCACAGGA CTCTCAGAAC TGGACTCCTT
0361 GCTGCAGGAT CTGCAGAAAA TCGATGTACC GGTCAACTAC AGTACTCCAG TCTCGAAATA
0421 CAATACGATG AATAGTTATG CCACCGTGGA GGAGCGTCCT TCAGTGGACA GCCTGCTGAA
0481 AGAACTGGAC AATGCTCACA TC |
| Assemble Data |
18061R-2.IR_full 1 CCCTCAGCGACTGTTTCAAAGTGGGCGAGTTCGAGCGACGTCTGGATGCTCTATTAGCCG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18061R-2.in silico 1 CCCTCAGCGACTGTTTCAAAGTGGGCGAGTTCGAGCGACGTCTGGATGCTCTATTAGCCG 60
18061R-2.IR_full 61 ACCTGCAAAACAGTGTGCCAGGCCAGCCGCAGCAACCTCAGCCGCAATATGGAACTGTCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18061R-2.in silico 61 ACCTGCAAAACAGTGTGCCAGGCCAGCCGCAGCAACCTCAGCCGCAATATGGAACTGTCC 120
18061R-2.IR_full 121 AGCCCAAACATCAAGCTCTGCAGCAACAGCAGTTTGTGGACAACACTCCAGGTTATGGAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18061R-2.in silico 121 AGCCCAAACATCAAGCTCTGCAGCAACAGCAGTTTGTGGACAACACTCCAGGTTATGGAA 180
18061R-2.IR_full 181 GTCTCAGGGGCAAAGCCCAGCCCCAGGTGTATCAAGAGCACTACAGCGTAGAGACACGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18061R-2.in silico 181 GTCTCAGGGGCAAAGCCCAGCCCCAGGTGTATCAAGAGCACTACAGCGTAGAGACACGCT 240
18061R-2.IR_full 241 CCCCAACGNCTGGACATGATTTTAATGGCTCCCTCAACGACTCCCGGGATACGCTAACCA 300
|||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||||
18061R-2.in silico 241 CCCCAACGGCTGGACATGATTTTAATGGCT-CCTCAACGACT-CCGGGATACGCTAACCA 300
18061R-2.IR_full 301 GGGATCGTTGCCACGTCAGGCGGCGGGNGCAAGCACAGGACTCTCAGAACTGGACTCCTT 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
18061R-2.in silico 301 GGGATCGTTGCCACGTCAGGCGGCGGGTGCAAGCACAGGACTCTCAGAACTGGACTCCTT 360
18061R-2.IR_full 361 GCTGCAGGATCTGCAGAAAATCGATGTACCGGTCAACTACAGTACTCCAGTCTCGAAATA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18061R-2.in silico 361 GCTGCAGGATCTGCAGAAAATCGATGTACCGGTCAACTACAGTACTCCAGTCTCGAAATA 420
18061R-2.IR_full 421 CAATACGATGAATAGTTATGCCACCGTGGAGGAGCGTCCTTCAGTGGACAGCCTGCTGAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18061R-2.in silico 421 CAATACGATGAATAGTTATGCCACCGTGGAGGAGCGTCCTTCAGTGGACAGCCTGCTGAA 480
18061R-2.IR_full 481 AGAACTGGACAATGCTCACATC 502
||||||||||||||||||||||
18061R-2.in silico 481 AGAACTGGACAATGCTCACATC 502
|
| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_078877.3 |
CG31794-RA, transcript variant A (Pax), mRNA |
| 91.28 |
440 |
2 |
1 |
1 |
NM_165293.2 |
CG31794-RC, transcript variant C (Pax), mRNA |
| 90.87 |
438 |
2 |
1 |
1 |
NM_165295.2 |
CG31794-RB, transcript variant B (Pax), mRNA |
| 90.66 |
437 |
1 |
1 |
1 |
NM_001038824.1 |
CG31794-RG, transcript variant G (Pax), mRNA |
| 90.66 |
437 |
1 |
1 |
1 |
NM_165294.2 |
CG31794-RF, transcript variant F (Pax), mRNA |
| 0.2 |
1 |
4 |
2 |
3 |
NM_132734.2 |
CG9411-RA (CG9411), mRNA |
| 0 |
0 |
4 |
3 |
4 |
NM_079282.1 |
CG3322-RA (LanB2), mRNA |
| 0 |
0 |
3 |
5 |
7 |
NM_167189.2 |
CG32705-RA (CG32705), mRNA |
| 0 |
0 |
3 |
2 |
3 |
NM_176360.1 |
CG32206-RC, transcript variant C (CG32206), mRNA |
| 0 |
0 |
3 |
2 |
3 |
NM_168794.2 |
CG32206-RB, transcript variant B (CG32206), mRNA |
| 0 |
0 |
2 |
7 |
16 |
NM_164374.1 |
CG18497-RA, transcript variant A (spen), mRNA |
| 0 |
0 |
2 |
7 |
16 |
NM_079979.2 |
CG18497-RB, transcript variant B (spen), mRNA |
| 0 |
0 |
2 |
7 |
15 |
NM_164375.1 |
CG18497-RC, transcript variant C (spen), mRNA |
| 0 |
0 |
2 |
6 |
2 |
NM_130517.2 |
CG3026-RA (mus81), mRNA |
| 0 |
0 |
2 |
5 |
11 |
NM_140468.2 |
CG9425-RA, transcript variant A (CG9425), mRNA |
| 0 |
0 |
2 |
5 |
11 |
NM_206362.1 |
CG9425-RB, transcript variant B (CG9425), mRNA |
| 0 |
0 |
2 |
3 |
11 |
NM_136093.2 |
CG10492-RA (CG10492), mRNA |
| 0 |
0 |
2 |
3 |
7 |
NM_137107.1 |
CG13942-RA (CG13942), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_141958.2 |
CG18616-RA (CG18616), mRNA |
| 0 |
0 |
2 |
2 |
6 |
NM_135768.2 |
CG16972-RA (CG16972), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_136878.2 |
CG8364-RB, transcript variant B (Rep3), mRNA |
| 0 |
0 |
1 |
7 |
7 |
NM_168681.2 |
CG3849-RB, transcript variant B (Lasp), mRNA |
| 0 |
0 |
1 |
7 |
4 |
NM_140655.1 |
CG3849-RA, transcript variant A (Lasp), mRNA |
| 0 |
0 |
1 |
6 |
9 |
NM_176121.1 |
CG33183-RC, transcript variant C (Hr46), mRNA |
| 0 |
0 |
1 |
6 |
3 |
NM_142427.2 |
CG7940-RA (CG7940), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_139450.2 |
CG5714-RA (ecd), mRNA |
| 0 |
0 |
1 |
4 |
2 |
NM_140907.1 |
CG17732-RA (CG17732), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_141602.2 |
CG11982-RA (CG11982), mRNA |
| 0 |
0 |
1 |
2 |
7 |
NM_057523.3 |
CG18412-RA (ph-p), mRNA |
| 0 |
0 |
1 |
2 |
7 |
NM_080079.2 |
CG32120-RA (sens), mRNA |
|
|
|
