|
NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
|
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
17090R-1 |
Symbol |
CG17090 |
Full Name |
CG17090 |
CG No |
CG17090 |
Old CG No |
CG17090 |
Synonyms |
HIPK, CG17090 |
Accession No (Link to NCBI) |
NM_138194.2 |
Inserted Chr. |
ll |
Insertional Mutation |
|
Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
|
Reference
[Please submit your publication]
|
Wang SJH, Sinclair DAR, Kim HY, Kinsey SD, Yoo B, Shih CRY, Wong KKL, Krieger C, Harden N, Verheyen EM. Homeodomain-interacting protein kinase (Hipk) plays roles in nervous system and muscle structure and function. PLoS One (2020) 15(3) e0221006
[
PubMed ID = 32187190
]
[
RRC reference
]
Cho Y, Lai CM, Lin KY, Hsu HJ. A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development. G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
Swarup S, Pradhan-Sundd T, Verheyen EM. Genome-wide identification of phospho-regulators of Wnt signaling in Drosophila. Development (2015) 142(8) 1502-15
[
PubMed ID = 25852200
]
[
RRC reference
]
Lee W, Swarup S, Chen J, Ishitani T, Verheyen EM. Homeodomain-interacting protein kinases (Hipks) promote Wnt/Wg signaling through stabilization of beta-catenin/Arm and stimulation of target gene expression. Development (2009) 136(2) 241-51
[
PubMed ID = 19088090
]
[
RRC reference
]
Huang H, Du G, Chen H, Liang X, Li C, Zhu N, Xue L, Ma J, Jiao R. Drosophila Smt3 negatively regulates JNK signaling through sequestering Hipk in the nucleus. Development (2011) 138(12) 2477-85
[
PubMed ID = 21561986
]
[
RRC reference
]
|
Comment |
|
Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCCCCCAAAAGCGTCCGATTTC |
Primer Seq. 3' |
aatctagaggtaccCCACTGCTCGACCTTTTGCTG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CCCCCAAAAG CGTCCGATTT CGTTGACTAC GCCGTTGCCG GGGGCGGGGG ATCCGGATTC
0061 TGTTCGGGAT TAGGAGCGGG ACTTTCAGTC AGGGCGACGT CCTTCTACGG CGATCAAACG
0121 GTAACGGCAA CTACGGACGG GACGCGTCAC CAGGAACAAC AACAACAACA ACTGCAGCAG
0181 CAGCAACAGC AGCATATCCT AAGGCAACCT GCAACATCCG CATCGACTTC ATCGGTAGCT
0241 GCAGCAGCAA CCAGCAAGCG AAAACGTCAA ACAGATTGTG ATTGCGGCTG CGTCGACTCA
0301 TATAACTCCA GCCACGGCCC GCCAGTGCAG CAGGACTCTT TCAGCAGCAG CGGGAGCGGG
0361 ATCTGTGGGA TCGAAAGCGG GATCAGGACC AGGACCAGAC GGAATCGGGC CCATCAGCAG
0421 CCTCAAAACG GCGCACACAA AGGTCGCCAC CTCGGGGGGT CATGCCAACA CGCAGCCCCC
0481 CAGCAAAAGG TCGAGCAGTG G |
in silico PCR Fragment |
0001 CCCCCAAAAG CGTCCGATTT CGTTGACTAC GCCGTTGCCG GGGGCGGGGG ATCCGGATTC
0061 TGTTCGGGAT TAGGAGCGGG ACTTTCAGTC AGGGCGACGT CCTTCTACGG CGATCAAACG
0121 GTAACGGCAA CTACGGACGG GACGCGTCAC CAGGAACAAC AACAACAACA ACTGCAGCAG
0181 CAGCAACAGC AGCATATCCT AAGGCAACCT GCAACATCCG CATCGACTTC ATCGGTAGCT
0241 GCAGCAGCAA CCAGCAAGCG AAAACGTCAA ACAGATTGTG ATTGCGGCTG CGTCGACTCA
0301 TATAACTCCA GCCACGGCCC GCCAGTGCAG CAGGACTC-T TCAGCAGCAG CGGGAGCGGG
0361 ATCTGTGGGA TCGAAAGCGG GATCAGGACC AGGACCAGAC GGAATCGGGC CCATCAGCAG
0421 CCTCAAAACG GCGCACACAA AGGTCGCCAC CTCGGGGGGT CATGCCAACA CGCAGCCCCC
0481 CAGCAAAAGG TCGAGCAGTG G |
Assemble Data |
17090R-1.IR_full 1 CCCCCAAAAGCGTCCGATTTCGTTGACTACGCCGTTGCCGGGGGCGGGGGATCCGGATTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico 1 CCCCCAAAAGCGTCCGATTTCGTTGACTACGCCGTTGCCGGGGGCGGGGGATCCGGATTC 60
17090R-1.IR_full 61 TGTTCGGGATTAGGAGCGGGACTTTCAGTCAGGGCGACGTCCTTCTACGGCGATCAAACG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico 61 TGTTCGGGATTAGGAGCGGGACTTTCAGTCAGGGCGACGTCCTTCTACGGCGATCAAACG 120
17090R-1.IR_full 121 GTAACGGCAACTACGGACGGGACGCGTCACCAGGAACAACAACAACAACAACTGCAGCAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico 121 GTAACGGCAACTACGGACGGGACGCGTCACCAGGAACAACAACAACAACAACTGCAGCAG 180
17090R-1.IR_full 181 CAGCAACAGCAGCATATCCTAAGGCAACCTGCAACATCCGCATCGACTTCATCGGTAGCT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico 181 CAGCAACAGCAGCATATCCTAAGGCAACCTGCAACATCCGCATCGACTTCATCGGTAGCT 240
17090R-1.IR_full 241 GCAGCAGCAACCAGCAAGCGAAAACGTCAAACAGATTGTGATTGCGGCTGCGTCGACTCA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico 241 GCAGCAGCAACCAGCAAGCGAAAACGTCAAACAGATTGTGATTGCGGCTGCGTCGACTCA 300
17090R-1.IR_full 301 TATAACTCCAGCCACGGCCCGCCAGTGCAGCAGGACTCTTTCAGCAGCAGCGGGAGCGGG 360
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
17090R-1.in silico 301 TATAACTCCAGCCACGGCCCGCCAGTGCAGCAGGACTC-TTCAGCAGCAGCGGGAGCGGG 360
17090R-1.IR_full 361 ATCTGTGGGATCGAAAGCGGGATCAGGACCAGGACCAGACGGAATCGGGCCCATCAGCAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico 361 ATCTGTGGGATCGAAAGCGGGATCAGGACCAGGACCAGACGGAATCGGGCCCATCAGCAG 420
17090R-1.IR_full 421 CCTCAAAACGGCGCACACAAAGGTCGCCACCTCGGGGGGTCATGCCAACACGCAGCCCCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico 421 CCTCAAAACGGCGCACACAAAGGTCGCCACCTCGGGGGGTCATGCCAACACGCAGCCCCC 480
17090R-1.IR_full 481 CAGCAAAAGGTCGAGCAGTGG 501
|||||||||||||||||||||
17090R-1.in silico 481 CAGCAAAAGGTCGAGCAGTGG 501
|
Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
3 |
21 |
89 |
NM_167834.1 |
CG17090-RB, transcript variant B (CG17090), mRNA |
100 |
482 |
3 |
21 |
89 |
NM_138194.2 |
CG17090-RA, transcript variant A (CG17090), mRNA |
3.73 |
18 |
20 |
59 |
218 |
NM_176542.1 |
CG7029-RA (CG7029), mRNA |
2.9 |
14 |
202 |
714 |
1530 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
2.9 |
14 |
202 |
714 |
1530 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
2.9 |
14 |
202 |
714 |
1530 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
2.9 |
14 |
28 |
92 |
261 |
NM_169386.1 |
CG17228-RA, transcript variant A (pros), mRNA |
2.69 |
13 |
19 |
63 |
215 |
NM_080157.2 |
CG11648-RB, transcript variant B (Abd-B), mRNA |
2.28 |
11 |
25 |
75 |
223 |
NM_176459.1 |
CG17228-RD, transcript variant D (pros), mRNA |
2.28 |
11 |
25 |
75 |
223 |
NM_079593.3 |
CG17228-RC, transcript variant C (pros), mRNA |
2.07 |
10 |
49 |
206 |
498 |
NM_079903.2 |
CG15319-RB (nej), mRNA |
1.86 |
9 |
8 |
29 |
94 |
NM_164696.1 |
CG31635-RA (CG31635), mRNA |
1.65 |
8 |
72 |
248 |
564 |
NM_079671.2 |
CG7847-RA, transcript variant A (sr), mRNA |
1.65 |
8 |
40 |
111 |
304 |
NM_132525.1 |
CG15740-RA (CG15740), mRNA |
1.65 |
8 |
39 |
228 |
487 |
NM_139493.2 |
CG2083-RA (CG2083), mRNA |
1.65 |
8 |
35 |
97 |
208 |
NM_132004.2 |
CG4136-RA (CG4136), mRNA |
1.65 |
8 |
32 |
165 |
373 |
NM_167000.1 |
CG32778-RA (CG32778), mRNA |
1.65 |
8 |
11 |
50 |
153 |
NM_164516.1 |
CG8817-RA, transcript variant A (lilli), mRNA |
1.65 |
8 |
11 |
47 |
138 |
NM_078740.2 |
CG8817-RB, transcript variant B (lilli), mRNA |
1.65 |
8 |
10 |
40 |
115 |
NM_164517.1 |
CG8817-RC, transcript variant C (lilli), mRNA |
1.45 |
7 |
22 |
82 |
255 |
NM_165034.1 |
CG6043-RA, transcript variant A (CG6043), mRNA |
1.45 |
7 |
22 |
82 |
255 |
NM_165037.1 |
CG6043-RC, transcript variant C (CG6043), mRNA |
1.45 |
7 |
22 |
82 |
255 |
NM_165035.1 |
CG6043-RB, transcript variant B (CG6043), mRNA |
1.45 |
7 |
22 |
82 |
255 |
NM_135785.1 |
CG6043-RD, transcript variant D (CG6043), mRNA |
1.45 |
7 |
21 |
91 |
206 |
NM_132578.1 |
CG11146-RA (CG11146), mRNA |
1.45 |
7 |
20 |
100 |
272 |
NM_142597.2 |
CG12254-RA (MED25), mRNA |
1.45 |
7 |
18 |
58 |
125 |
NM_057511.3 |
CG3936-RA (N), mRNA |
1.45 |
7 |
17 |
57 |
143 |
NM_169652.2 |
CG31302-RA, transcript variant A (CG31302), mRNA |
1.45 |
7 |
17 |
57 |
143 |
NM_169654.2 |
CG31302-RC, transcript variant C (CG31302), mRNA |
1.45 |
7 |
17 |
57 |
143 |
NM_169653.2 |
CG31302-RB, transcript variant B (CG31302), mRNA |
|
|
|