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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 17090R-1 
 Symbol CG17090  Full Name CG17090 
 CG No CG17090  Old CG No CG17090 
 Synonyms HIPK, CG17090 
 Accession No (Link to NCBI) NM_138194.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Wang SJH, Sinclair DAR, Kim HY, Kinsey SD, Yoo B, Shih CRY, Wong KKL, Krieger C, Harden N, Verheyen EM.
Homeodomain-interacting protein kinase (Hipk) plays roles in nervous system and muscle structure and function.
PLoS One (2020) 15(3) e0221006 [ PubMed ID = 32187190 ] [ RRC reference ]

Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354 [ PubMed ID = 29764959 ] [ RRC reference ]

Swarup S, Pradhan-Sundd T, Verheyen EM.
Genome-wide identification of phospho-regulators of Wnt signaling in Drosophila.
Development (2015) 142(8) 1502-15 [ PubMed ID = 25852200 ] [ RRC reference ]

Lee W, Swarup S, Chen J, Ishitani T, Verheyen EM.
Homeodomain-interacting protein kinases (Hipks) promote Wnt/Wg signaling through stabilization of beta-catenin/Arm and stimulation of target gene expression.
Development (2009) 136(2) 241-51 [ PubMed ID = 19088090 ] [ RRC reference ]

Huang H, Du G, Chen H, Liang X, Li C, Zhu N, Xue L, Ma J, Jiao R.
Drosophila Smt3 negatively regulates JNK signaling through sequestering Hipk in the nucleus.
Development (2011) 138(12) 2477-85 [ PubMed ID = 21561986 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCCCCAAAAGCGTCCGATTTC 
 Primer Seq. 3'
aatctagaggtaccCCACTGCTCGACCTTTTGCTG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCCCCAAAAG CGTCCGATTT CGTTGACTAC GCCGTTGCCG GGGGCGGGGG ATCCGGATTC 
0061 TGTTCGGGAT TAGGAGCGGG ACTTTCAGTC AGGGCGACGT CCTTCTACGG CGATCAAACG 
0121 GTAACGGCAA CTACGGACGG GACGCGTCAC CAGGAACAAC AACAACAACA ACTGCAGCAG 
0181 CAGCAACAGC AGCATATCCT AAGGCAACCT GCAACATCCG CATCGACTTC ATCGGTAGCT 
0241 GCAGCAGCAA CCAGCAAGCG AAAACGTCAA ACAGATTGTG ATTGCGGCTG CGTCGACTCA 
0301 TATAACTCCA GCCACGGCCC GCCAGTGCAG CAGGACTCTT TCAGCAGCAG CGGGAGCGGG 
0361 ATCTGTGGGA TCGAAAGCGG GATCAGGACC AGGACCAGAC GGAATCGGGC CCATCAGCAG 
0421 CCTCAAAACG GCGCACACAA AGGTCGCCAC CTCGGGGGGT CATGCCAACA CGCAGCCCCC 
0481 CAGCAAAAGG TCGAGCAGTG G 
 in silico PCR Fragment
0001 CCCCCAAAAG CGTCCGATTT CGTTGACTAC GCCGTTGCCG GGGGCGGGGG ATCCGGATTC 
0061 TGTTCGGGAT TAGGAGCGGG ACTTTCAGTC AGGGCGACGT CCTTCTACGG CGATCAAACG 
0121 GTAACGGCAA CTACGGACGG GACGCGTCAC CAGGAACAAC AACAACAACA ACTGCAGCAG 
0181 CAGCAACAGC AGCATATCCT AAGGCAACCT GCAACATCCG CATCGACTTC ATCGGTAGCT 
0241 GCAGCAGCAA CCAGCAAGCG AAAACGTCAA ACAGATTGTG ATTGCGGCTG CGTCGACTCA 
0301 TATAACTCCA GCCACGGCCC GCCAGTGCAG CAGGACTC-T TCAGCAGCAG CGGGAGCGGG 
0361 ATCTGTGGGA TCGAAAGCGG GATCAGGACC AGGACCAGAC GGAATCGGGC CCATCAGCAG 
0421 CCTCAAAACG GCGCACACAA AGGTCGCCAC CTCGGGGGGT CATGCCAACA CGCAGCCCCC 
0481 CAGCAAAAGG TCGAGCAGTG G 
 Assemble Data

17090R-1.IR_full       1   CCCCCAAAAGCGTCCGATTTCGTTGACTACGCCGTTGCCGGGGGCGGGGGATCCGGATTC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico     1   CCCCCAAAAGCGTCCGATTTCGTTGACTACGCCGTTGCCGGGGGCGGGGGATCCGGATTC 60


17090R-1.IR_full       61  TGTTCGGGATTAGGAGCGGGACTTTCAGTCAGGGCGACGTCCTTCTACGGCGATCAAACG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico     61  TGTTCGGGATTAGGAGCGGGACTTTCAGTCAGGGCGACGTCCTTCTACGGCGATCAAACG 120


17090R-1.IR_full       121 GTAACGGCAACTACGGACGGGACGCGTCACCAGGAACAACAACAACAACAACTGCAGCAG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico     121 GTAACGGCAACTACGGACGGGACGCGTCACCAGGAACAACAACAACAACAACTGCAGCAG 180


17090R-1.IR_full       181 CAGCAACAGCAGCATATCCTAAGGCAACCTGCAACATCCGCATCGACTTCATCGGTAGCT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico     181 CAGCAACAGCAGCATATCCTAAGGCAACCTGCAACATCCGCATCGACTTCATCGGTAGCT 240


17090R-1.IR_full       241 GCAGCAGCAACCAGCAAGCGAAAACGTCAAACAGATTGTGATTGCGGCTGCGTCGACTCA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico     241 GCAGCAGCAACCAGCAAGCGAAAACGTCAAACAGATTGTGATTGCGGCTGCGTCGACTCA 300


17090R-1.IR_full       301 TATAACTCCAGCCACGGCCCGCCAGTGCAGCAGGACTCTTTCAGCAGCAGCGGGAGCGGG 360
                           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
17090R-1.in silico     301 TATAACTCCAGCCACGGCCCGCCAGTGCAGCAGGACTC-TTCAGCAGCAGCGGGAGCGGG 360


17090R-1.IR_full       361 ATCTGTGGGATCGAAAGCGGGATCAGGACCAGGACCAGACGGAATCGGGCCCATCAGCAG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico     361 ATCTGTGGGATCGAAAGCGGGATCAGGACCAGGACCAGACGGAATCGGGCCCATCAGCAG 420


17090R-1.IR_full       421 CCTCAAAACGGCGCACACAAAGGTCGCCACCTCGGGGGGTCATGCCAACACGCAGCCCCC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17090R-1.in silico     421 CCTCAAAACGGCGCACACAAAGGTCGCCACCTCGGGGGGTCATGCCAACACGCAGCCCCC 480


17090R-1.IR_full       481 CAGCAAAAGGTCGAGCAGTGG 501
                           |||||||||||||||||||||
17090R-1.in silico     481 CAGCAAAAGGTCGAGCAGTGG 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  21  89  NM_167834.1  CG17090-RB, transcript variant B (CG17090), mRNA 
100   482  21  89  NM_138194.2  CG17090-RA, transcript variant A (CG17090), mRNA 
3.73   18  20  59  218  NM_176542.1  CG7029-RA (CG7029), mRNA 
2.9   14  202  714  1530  NM_167335.1  CG4013-RC, transcript variant C (Smr), mRNA 
2.9   14  202  714  1530  NM_167334.1  CG4013-RB, transcript variant B (Smr), mRNA 
2.9   14  202  714  1530  NM_080536.2  CG4013-RA, transcript variant A (Smr), mRNA 
2.9   14  28  92  261  NM_169386.1  CG17228-RA, transcript variant A (pros), mRNA 
2.69   13  19  63  215  NM_080157.2  CG11648-RB, transcript variant B (Abd-B), mRNA 
2.28   11  25  75  223  NM_176459.1  CG17228-RD, transcript variant D (pros), mRNA 
2.28   11  25  75  223  NM_079593.3  CG17228-RC, transcript variant C (pros), mRNA 
2.07   10  49  206  498  NM_079903.2  CG15319-RB (nej), mRNA 
1.86   29  94  NM_164696.1  CG31635-RA (CG31635), mRNA 
1.65   72  248  564  NM_079671.2  CG7847-RA, transcript variant A (sr), mRNA 
1.65   40  111  304  NM_132525.1  CG15740-RA (CG15740), mRNA 
1.65   39  228  487  NM_139493.2  CG2083-RA (CG2083), mRNA 
1.65   35  97  208  NM_132004.2  CG4136-RA (CG4136), mRNA 
1.65   32  165  373  NM_167000.1  CG32778-RA (CG32778), mRNA 
1.65   11  50  153  NM_164516.1  CG8817-RA, transcript variant A (lilli), mRNA 
1.65   11  47  138  NM_078740.2  CG8817-RB, transcript variant B (lilli), mRNA 
1.65   10  40  115  NM_164517.1  CG8817-RC, transcript variant C (lilli), mRNA 
1.45   22  82  255  NM_165034.1  CG6043-RA, transcript variant A (CG6043), mRNA 
1.45   22  82  255  NM_165037.1  CG6043-RC, transcript variant C (CG6043), mRNA 
1.45   22  82  255  NM_165035.1  CG6043-RB, transcript variant B (CG6043), mRNA 
1.45   22  82  255  NM_135785.1  CG6043-RD, transcript variant D (CG6043), mRNA 
1.45   21  91  206  NM_132578.1  CG11146-RA (CG11146), mRNA 
1.45   20  100  272  NM_142597.2  CG12254-RA (MED25), mRNA 
1.45   18  58  125  NM_057511.3  CG3936-RA (N), mRNA 
1.45   17  57  143  NM_169652.2  CG31302-RA, transcript variant A (CG31302), mRNA 
1.45   17  57  143  NM_169654.2  CG31302-RC, transcript variant C (CG31302), mRNA 
1.45   17  57  143  NM_169653.2  CG31302-RB, transcript variant B (CG31302), mRNA 

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