NIG-Fly - Fly Stocks of National Institute of Genetics -

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NIG-RNAi Strains Detail

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discarded

Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID 11505R-2

Symbol CG11505 Full Name CG11505

CG No CG11505 Old CG No CG11505

Synonyms CG11505

Accession No (Link to NCBI) NM_168007.1

Inserted Chr. lll

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees lethal

Map Viewer

Reference
[Please submit your publication] Ohhara Y, Hoshino G, Imahori K, Matsuyuki T, Yamakawa-Kobayashi K.
The Nutrient-Responsive Molecular Chaperone Hsp90 Supports Growth and Development in Drosophila.
Front Physiol (2021) 12 690564 [ PubMed ID = 34239451 ] [ RRC reference ]

Olesnicky EC, Killian DJ, Garcia E, Morton MC, Rathjen AR, Sola IE, Gavis ER.
Extensive use of RNA-binding proteins in Drosophila sensory neuron dendrite morphogenesis.
G3 (Bethesda) (2014) 4(2) 297-306 [ PubMed ID = 24347626 ] [ RRC reference ]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgATGAACGGAGATGCACTCAAG

Primer Seq. 3'

aatctagaggtaccACTACTCCGGATGGTCCTACT

Predicted Fragment Size

IR fragment full Seq

0001 ATGAACGGAG ATGCACTCAA GATCCAGCCG CCCGTCTACA CCAACGTTCC TGTCGAGACG 
0061 GCGATGCTAG CAACTAATCT GTTTGGCGCC ACAACCCAAA TTGCAGCCTC ANCCCGCAGC 
0121 AGCCGCCGCT GCCCACATAC CGTTGATCAC AGCCGCAGCT GCAGCCGCCG CCGCCGCAGG 
0181 CGCTCCAGCA GTAGCTCCTC CAGTTGCTGT TGCTCCAGTG GCCACCGCAT CAGCAGCACA 
0241 AGCAGCAGTT GTGCCCGCCC AACAACAGCA GCAGGCGCAT CCACACCAGG CCCAGATTTT 
0301 GGCCCATACG CACGTAGCCC ACCAACAACA ACAGCAGCAG CAGCAGCAGA CGATCCAACA 
0361 GCATCTCCAC CAGCAGCAGC AACAACAGTC GCCGCATCCC GCCCAGCATC TGACCTACGG 
0421 CCATCAGCCg GCGCTTTTCG CAGGCCACGG CTGGAGGATC AGGAACAATT TCCGGAGGAG 
0481 CAGTAGGACC ATCCGGAGTA GT

in silico PCR Fragment

0001 ATGAACGGAG ATGCACTCAA GATCCAGCCG CCCGTCTACA CCAACGTTCC TGTCGAGACG 
0061 GCGATGCTAG CAACTAATCT GTTTGGCGCC ACAACCCAAA TTGCAGCCTC A-CCCGCAGC 
0121 AGCCGCCGCT GCCCACATAC CGTTGATCAC AGCCGCAGCT GCAGCCGCCG CCGCCGCAGG 
0181 CGCTCCAGCA GTAGCTCCTC CAGTTGCCGT TGCTCCAGTG GCCACCGCAT CAGCAGCACA 
0241 AGCAGCAGTT GTGCCCGCCC AACAACAGCA GCAGGCGCAT CCACACCAGG CCCAGATTTT 
0301 GGCCCATACG CACGTAGCCC ACCAACAACA ACAGCAGCAG CAGCAGCAGA CGATCCAACA 
0361 GCATCTCCAC CAGCAGCAGC AACAACAGTC GCCGCATCCC GCCCAGCATC TGACCTACGG 
0421 CCATCAGCCG GCGC-TTTCG CAGGCCACGG CTGGAGGATC AGGAACAATT TCCGGAGGAG 
0481 CAGTAGGACC ATCCGGAGTA GT

Assemble Data


11505R-2.IR_full       1   ATGAACGGAGATGCACTCAAGATCCAGCCGCCCGTCTACACCAACGTTCCTGTCGAGACG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11505R-2.in silico     1   ATGAACGGAGATGCACTCAAGATCCAGCCGCCCGTCTACACCAACGTTCCTGTCGAGACG 60


11505R-2.IR_full       61  GCGATGCTAGCAACTAATCTGTTTGGCGCCACAACCCAAATTGCAGCCTCANCCCGCAGC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
11505R-2.in silico     61  GCGATGCTAGCAACTAATCTGTTTGGCGCCACAACCCAAATTGCAGCCTCA-CCCGCAGC 120


11505R-2.IR_full       121 AGCCGCCGCTGCCCACATACCGTTGATCACAGCCGCAGCTGCAGCCGCCGCCGCCGCAGG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11505R-2.in silico     121 AGCCGCCGCTGCCCACATACCGTTGATCACAGCCGCAGCTGCAGCCGCCGCCGCCGCAGG 180


11505R-2.IR_full       181 CGCTCCAGCAGTAGCTCCTCCAGTTGCTGTTGCTCCAGTGGCCACCGCATCAGCAGCACA 240
                           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
11505R-2.in silico     181 CGCTCCAGCAGTAGCTCCTCCAGTTGCCGTTGCTCCAGTGGCCACCGCATCAGCAGCACA 240


11505R-2.IR_full       241 AGCAGCAGTTGTGCCCGCCCAACAACAGCAGCAGGCGCATCCACACCAGGCCCAGATTTT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11505R-2.in silico     241 AGCAGCAGTTGTGCCCGCCCAACAACAGCAGCAGGCGCATCCACACCAGGCCCAGATTTT 300


11505R-2.IR_full       301 GGCCCATACGCACGTAGCCCACCAACAACAACAGCAGCAGCAGCAGCAGACGATCCAACA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11505R-2.in silico     301 GGCCCATACGCACGTAGCCCACCAACAACAACAGCAGCAGCAGCAGCAGACGATCCAACA 360


11505R-2.IR_full       361 GCATCTCCACCAGCAGCAGCAACAACAGTCGCCGCATCCCGCCCAGCATCTGACCTACGG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11505R-2.in silico     361 GCATCTCCACCAGCAGCAGCAACAACAGTCGCCGCATCCCGCCCAGCATCTGACCTACGG 420


11505R-2.IR_full       421 CCATCAGCCGGCGCTTTTCGCAGGCCACGGCTGGAGGATCAGGAACAATTTCCGGAGGAG 480
                           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
11505R-2.in silico     421 CCATCAGCCGGCGC-TTTCGCAGGCCACGGCTGGAGGATCAGGAACAATTTCCGGAGGAG 480


11505R-2.IR_full       481 CAGTAGGACCATCCGGAGTAGT 502
                           ||||||||||||||||||||||
11505R-2.in silico     481 CAGTAGGACCATCCGGAGTAGT 502

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100.62	485	32	92	277	NM_168007.1	CG11505-RA, transcript variant A (CG11505), mRNA
100.62	485	32	92	277	NM_139536.1	CG11505-RB, transcript variant B (CG11505), mRNA
100	482	14	27	122	NM_206263.1	CG11505-RC, transcript variant C (CG11505), mRNA
10.16	49	322	959	2468	NM_167335.1	CG4013-RC, transcript variant C (Smr), mRNA
10.16	49	322	959	2468	NM_167334.1	CG4013-RB, transcript variant B (Smr), mRNA
10.16	49	322	959	2468	NM_080536.2	CG4013-RA, transcript variant A (Smr), mRNA
7.26	35	141	321	862	NM_168571.2	CG32133-RA (CG32133), mRNA
5.39	26	81	193	514	NM_137690.2	CG10543-RA, transcript variant A (CG10543), mRNA
5.39	26	77	173	444	NM_166416.1	CG10543-RB, transcript variant B (CG10543), mRNA
5.39	26	77	173	442	NM_176241.1	CG10543-RC, transcript variant C (CG10543), mRNA
4.77	23	84	308	734	NM_079903.2	CG15319-RB (nej), mRNA
4.56	22	90	218	551	NM_206286.1	CG10107-RC, transcript variant C (CG10107), mRNA
4.56	22	90	218	551	NM_139799.3	CG10107-RA, transcript variant A (CG10107), mRNA
4.56	22	82	157	388	NM_168413.1	CG32062-RB, transcript variant B (CG32062), mRNA
4.56	22	82	157	388	NM_168412.1	CG32062-RD, transcript variant D (CG32062), mRNA
4.56	22	69	168	446	NM_137212.2	CG30089-RA (CG30089), mRNA
4.56	22	51	98	226	NM_057489.3	CG4722-RA (bib), mRNA
3.94	19	141	432	1048	NM_080376.1	CG8118-RA, transcript variant A (mam), mRNA
3.94	19	141	432	1048	NM_166030.1	CG8118-RB, transcript variant B (mam), mRNA
3.73	18	116	321	828	NM_135077.2	CG14023-RA (CG14023), mRNA
3.73	18	94	207	567	NM_132246.2	CG10555-RA (CG10555), mRNA
3.52	17	67	210	519	NM_079853.2	CG15532-RA, transcript variant A (hdc), mRNA
3.52	17	67	210	519	NM_176591.1	CG15532-RC, transcript variant C (hdc), mRNA
3.31	16	106	394	1051	NM_001038734.1	CG16902-RC (Hr4), mRNA
3.31	16	73	174	552	NM_168179.1	CG32394-RA (CG32394), mRNA
3.11	15	98	308	827	NM_079671.2	CG7847-RA, transcript variant A (sr), mRNA
3.11	15	92	254	685	NM_169786.1	CG7847-RB, transcript variant B (sr), mRNA
3.11	15	73	210	534	NM_140402.2	CG17689-RA, transcript variant A (CG17689), mRNA
3.11	15	70	210	536	NM_057497.3	CG5058-RD, transcript variant D (grh), mRNA
3.11	15	70	210	534	NM_057496.3	CG5058-RC, transcript variant C (grh), mRNA

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