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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
1009R-2 |
Symbol |
Psa |
Full Name |
Puromycin sensitive aminopeptidase |
CG No |
CG1009 |
Old CG No |
CG1009 |
Synonyms |
dPsa, CG1009, Psa |
Accession No (Link to NCBI) |
NM_167885.1 |
Inserted Chr. |
X |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Kruppa AJ, Ott S, Chandraratna DS, Irving JA, Page RM, Speretta E, Seto T, Camargo LM, Marciniak SJ, Lomas DA, Crowther DC. Suppression of Aβ toxicity by puromycin-sensitive aminopeptidase is independent of its proteolytic activity. Biochim Biophys Acta (2013) 1832(12) 2115-26
[
PubMed ID = 23911349
]
[
RRC reference
]
Menzies FM, Hourez R, Imarisio S, Raspe M, Sadiq O, Chandraratna D, O'Kane C, Rock KL, Reits E, Goldberg AL, Rubinsztein DC. Puromycin-sensitive aminopeptidase protects against aggregation-prone proteins via autophagy. Hum Mol Genet (2010) 19(23) 4573-86
[
PubMed ID = 20829225
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCGAGCCCGCCATTAAAGCCAC |
Primer Seq. 3' |
aatctagaggtaccTGCCGAACCACTGATGGGCAA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CGAGCCCGCC ATTAAAGCCA CCTTCGACAT CACACTGGTG GTGCCCAAGG ACCGGGTGGC
0061 TCTGTCCAAC ATGCCGGTCA TCAAGGAGGA TTCCCTTCCA GACGGTCTGC GACGAGTGCG
0121 TTTCGACCGC ACGCCCATCA TGTCCACCTA CCTGGTGGCC GTCGTAGTGG GCGAGTACGA
0181 CTATGTCGAG GGCAAGTCCG ACGATGGCGT CCTCGTCAGG GTTTTCACAC CCGTTGGCAA
0241 ACGCGANGCA GGGCACCTTC GCCCTGGAGG TGGCCACCAA GGTGCTGCCG TACTACAAGG
0301 ACTACTTCAA CATCGCCTAT CCGTTGCCCA AGATGGACCT GATCGCCATC TCCGACTTCT
0361 CGGCCGGCGC CATGGAGAAC TGGGGCCTGG TCACCTACCG TGAGACCTTC GTGCTAGTGG
0421 ACCCGAAGAA CACCTCGCTG ATGCGCAAGC AGTCGATTGC GCTGACAGTG GGTCACGAGA
0481 TTGCCCATCA GTGGTTCGGC A |
in silico PCR Fragment |
0001 CGAGCCCGCC ATTAAAGCCA CCTTCGACAT CACACTGGTG GTGCCCAAGG ACCGGGTGGC
0061 TCTGTCCAAC ATGCCGGTCA TCAAGGAGGA TTCCCTTCCA GACGGTCTGC GACGAGTGCG
0121 TTTCGACCGC ACGCCCATCA TGTCCACCTA CCTGGTGGCC GTCGTAGTGG GCGAGTACGA
0181 CTATGTCGAG GGCAAGTCCG ACGATGGCGT CCTCGTCAGG GTTTTCACAC CCGTTGGCAA
0241 ACGCGA-GCA GGGCACTTTC GCCCTGGAGG TGGCCACCAA GGTGCTGCCG TACTACAAGG
0301 ACTACTTCAA CATCGCGTAT CCGTTACCCA AGATGGACCT CATCGCCATC TCCGACTTCT
0361 CGGCCGGCGC CATGGAGAAC TGGGGCCTGG TCACCTACCG TGAGACCTTT GTGCTAGTGG
0421 ACCCGAAGAA CACCTCGCTG ATGCGCAAGC AGTCGATTGC GCTGACAGTG GGTCACGAGA
0481 TTGCCCATCA GTGGTTCGGC A |
Assemble Data |
1009R-2.IR_full 1 CGAGCCCGCCATTAAAGCCACCTTCGACATCACACTGGTGGTGCCCAAGGACCGGGTGGC 60
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1009R-2.in silico 1 CGAGCCCGCCATTAAAGCCACCTTCGACATCACACTGGTGGTGCCCAAGGACCGGGTGGC 60
1009R-2.IR_full 61 TCTGTCCAACATGCCGGTCATCAAGGAGGATTCCCTTCCAGACGGTCTGCGACGAGTGCG 120
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1009R-2.in silico 61 TCTGTCCAACATGCCGGTCATCAAGGAGGATTCCCTTCCAGACGGTCTGCGACGAGTGCG 120
1009R-2.IR_full 121 TTTCGACCGCACGCCCATCATGTCCACCTACCTGGTGGCCGTCGTAGTGGGCGAGTACGA 180
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1009R-2.in silico 121 TTTCGACCGCACGCCCATCATGTCCACCTACCTGGTGGCCGTCGTAGTGGGCGAGTACGA 180
1009R-2.IR_full 181 CTATGTCGAGGGCAAGTCCGACGATGGCGTCCTCGTCAGGGTTTTCACACCCGTTGGCAA 240
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1009R-2.in silico 181 CTATGTCGAGGGCAAGTCCGACGATGGCGTCCTCGTCAGGGTTTTCACACCCGTTGGCAA 240
1009R-2.IR_full 241 ACGCGANGCAGGGCACCTTCGCCCTGGAGGTGGCCACCAAGGTGCTGCCGTACTACAAGG 300
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1009R-2.in silico 241 ACGCGA-GCAGGGCACTTTCGCCCTGGAGGTGGCCACCAAGGTGCTGCCGTACTACAAGG 300
1009R-2.IR_full 301 ACTACTTCAACATCGCCTATCCGTTGCCCAAGATGGACCTGATCGCCATCTCCGACTTCT 360
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1009R-2.in silico 301 ACTACTTCAACATCGCGTATCCGTTACCCAAGATGGACCTCATCGCCATCTCCGACTTCT 360
1009R-2.IR_full 361 CGGCCGGCGCCATGGAGAACTGGGGCCTGGTCACCTACCGTGAGACCTTCGTGCTAGTGG 420
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1009R-2.in silico 361 CGGCCGGCGCCATGGAGAACTGGGGCCTGGTCACCTACCGTGAGACCTTTGTGCTAGTGG 420
1009R-2.IR_full 421 ACCCGAAGAACACCTCGCTGATGCGCAAGCAGTCGATTGCGCTGACAGTGGGTCACGAGA 480
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1009R-2.in silico 421 ACCCGAAGAACACCTCGCTGATGCGCAAGCAGTCGATTGCGCTGACAGTGGGTCACGAGA 480
1009R-2.IR_full 481 TTGCCCATCAGTGGTTCGGCA 501
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1009R-2.in silico 481 TTGCCCATCAGTGGTTCGGCA 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
1 |
NM_167886.1 |
CG1009-RD, transcript variant D (Psa), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_139360.2 |
CG1009-RB, transcript variant B (Psa), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_167885.1 |
CG1009-RA, transcript variant A (Psa), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_167887.1 |
CG1009-RF, transcript variant F (Psa), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_167883.1 |
CG1009-RC, transcript variant C (Psa), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_167884.1 |
CG1009-RE, transcript variant E (Psa), mRNA |
1.03 |
5 |
12 |
10 |
11 |
NM_170405.1 |
CG11956-RB, transcript variant B (SP1029), mRNA |
1.03 |
5 |
12 |
10 |
11 |
NM_144361.1 |
CG11956-RA, transcript variant A (SP1029), mRNA |
1.03 |
5 |
12 |
10 |
11 |
NM_170406.1 |
CG11956-RC, transcript variant C (SP1029), mRNA |
0.62 |
3 |
13 |
21 |
19 |
NM_169964.1 |
CG31343-RA (CG31343), mRNA |
0.2 |
1 |
2 |
12 |
23 |
NM_144487.1 |
CG5518-RA (sda), mRNA |
0.2 |
1 |
2 |
5 |
11 |
NM_078564.2 |
CG1594-RA (hop), mRNA |
0 |
0 |
15 |
4 |
9 |
NM_137937.2 |
CG3502-RA (CG3502), mRNA |
0 |
0 |
11 |
7 |
14 |
NM_143432.2 |
CG31445-RA (CG31445), mRNA |
0 |
0 |
9 |
7 |
12 |
NM_169965.1 |
CG31233-RA (CG31233), mRNA |
0 |
0 |
7 |
13 |
9 |
NM_143431.1 |
CG11951-RA (CG11951), mRNA |
0 |
0 |
6 |
12 |
19 |
NM_143417.2 |
CG14516-RB, transcript variant B (CG14516), mRNA |
0 |
0 |
6 |
12 |
19 |
NM_170398.1 |
CG14516-RA, transcript variant A (CG14516), mRNA |
0 |
0 |
3 |
9 |
5 |
NM_135706.2 |
CG16996-RA (CG16996), mRNA |
0 |
0 |
3 |
3 |
6 |
NM_132416.1 |
CG2111-RA (CG2111), mRNA |
0 |
0 |
3 |
3 |
2 |
NM_058112.3 |
CG13388-RA, transcript variant A (Akap200), mRNA |
0 |
0 |
3 |
3 |
2 |
NM_175984.1 |
CG13388-RD, transcript variant D (Akap200), mRNA |
0 |
0 |
3 |
3 |
2 |
NM_164820.1 |
CG13388-RC, transcript variant C (Akap200), mRNA |
0 |
0 |
3 |
3 |
2 |
NM_058111.3 |
CG13388-RB, transcript variant B (Akap200), mRNA |
0 |
0 |
2 |
6 |
25 |
NM_142016.1 |
CG8773-RA (CG8773), mRNA |
0 |
0 |
2 |
5 |
17 |
NM_142722.1 |
CG5849-RA (CG5849), mRNA |
0 |
0 |
2 |
3 |
5 |
NM_137809.1 |
CG3292-RA (CG3292), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_134681.2 |
CG4164-RA (CG4164), mRNA |
0 |
0 |
2 |
2 |
6 |
NM_137912.1 |
CG9876-RA (CG9876), mRNA |
0 |
0 |
1 |
6 |
2 |
NM_167940.1 |
CG32305-RA (CG32305), mRNA |
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