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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9793R-1 
 Symbol CG9793  Full Name CG9793 
 CG No CG9793  Old CG No CG9793 
 Synonyms CG9793 
 Accession No (Link to NCBI) NM_141567.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354 [ PubMed ID = 29764959 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgGCGCAATCAAACTACGCTGGA 
 Primer Seq. 3' 
aatctagaggtaccCGCGGGGATTTCGACGATTTC 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 GCGCAATCAA ACTACGCTGG AACACATCAA ACTACTAACT GGAGCTGTGT TAAAGAACTG 
0061 TAGTACGTTG CCAAATCGAC TATGTGCGTC CCTGCCAAAC TTGTTTGCAA CAAGCCATAT 
0121 CCTTTAGGGA ACGCTGTTTG GAAGTCCAAA GGGAGTTGCT CCATTCCCAA GATGATGAAG 
0181 ACTTCCTTAG AATCTGCCAG GAATCTCCCA AAAGTGTCCT TGAGCAGGAG GAGTTGGAAC 
0241 TGGATCTGGC AGAAATAAGC ATAGAAGTCG AGCGATTAGA CGATCTCAAT GAAGGGCCCA 
0301 TTCAAAGCTC CGGTTTTAAA GTGGAGGACA TTCTAAATGA ATCTAAAATC AACGAAGACG 
0361 AGCCCAATAA TGAGGACGAT ATTGATTATA GTGAAATGGA TTACCTTATT TACGAAAGCG 
0421 ATACTGAAGT AGATGCAAAG CAGGAACTCA AATCAGACTC TGAGAATCCC AAAAAAAGGA 
0481 GAAATCGTCG AATANCCCCG cG 
 in silico PCR Fragment 
0001 GCGCAATCAA ACTACGCTGG AACACATCAA ACTACTAACT GGAGCTGTGT TAAAGAACTG 
0061 TAGTACGTTG CCAAATCGAC TATGTGCGT- CCTGCCAAAC TTGTTTGCAA CAAGCCATAT 
0121 CCTTTAGGGA ACGCTGTTTG GAAGTCCAAA GGGAGTTGCT CCATTCCCAA GATGATGAAG 
0181 ACTTCCTTAG AATCTGCCAG GAATCTCCCA AAAGTGTCCT TGAGCAGGAG GAGTTGGAAC 
0241 TGGATCTGGC AGAAATAAGC ATAGAAGTCG AGCGATTAGA CGATCTCAAT GAAGGGCCCA 
0301 TTCAAAGCTC CGGTTTTAAA GTGGAGGACA TTCTAAATGA ATCTAAAATC AACGAAGACG 
0361 AGCCCAATAA TGAGGACGAT ATTGATTATA GTGAAATGGA TTACCTTATT TACGAAAGCG 
0421 ATACTGAAGT AGATGCAAAG CAGGAACTCA AATCAGACTC TGAGAATCCC AAAAAAAGGA 
0481 GAAATCGTCG AA-ATCCCCG CG 
 Assemble Data 

9793R-1.IR_full       1   GCGCAATCAAACTACGCTGGAACACATCAAACTACTAACTGGAGCTGTGTTAAAGAACTG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9793R-1.in silico     1   GCGCAATCAAACTACGCTGGAACACATCAAACTACTAACTGGAGCTGTGTTAAAGAACTG 60


9793R-1.IR_full       61  TAGTACGTTGCCAAATCGACTATGTGCGTCCCTGCCAAACTTGTTTGCAACAAGCCATAT 120
                          ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
9793R-1.in silico     61  TAGTACGTTGCCAAATCGACTATGTGCGT-CCTGCCAAACTTGTTTGCAACAAGCCATAT 120


9793R-1.IR_full       121 CCTTTAGGGAACGCTGTTTGGAAGTCCAAAGGGAGTTGCTCCATTCCCAAGATGATGAAG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9793R-1.in silico     121 CCTTTAGGGAACGCTGTTTGGAAGTCCAAAGGGAGTTGCTCCATTCCCAAGATGATGAAG 180


9793R-1.IR_full       181 ACTTCCTTAGAATCTGCCAGGAATCTCCCAAAAGTGTCCTTGAGCAGGAGGAGTTGGAAC 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9793R-1.in silico     181 ACTTCCTTAGAATCTGCCAGGAATCTCCCAAAAGTGTCCTTGAGCAGGAGGAGTTGGAAC 240


9793R-1.IR_full       241 TGGATCTGGCAGAAATAAGCATAGAAGTCGAGCGATTAGACGATCTCAATGAAGGGCCCA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9793R-1.in silico     241 TGGATCTGGCAGAAATAAGCATAGAAGTCGAGCGATTAGACGATCTCAATGAAGGGCCCA 300


9793R-1.IR_full       301 TTCAAAGCTCCGGTTTTAAAGTGGAGGACATTCTAAATGAATCTAAAATCAACGAAGACG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9793R-1.in silico     301 TTCAAAGCTCCGGTTTTAAAGTGGAGGACATTCTAAATGAATCTAAAATCAACGAAGACG 360


9793R-1.IR_full       361 AGCCCAATAATGAGGACGATATTGATTATAGTGAAATGGATTACCTTATTTACGAAAGCG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9793R-1.in silico     361 AGCCCAATAATGAGGACGATATTGATTATAGTGAAATGGATTACCTTATTTACGAAAGCG 420


9793R-1.IR_full       421 ATACTGAAGTAGATGCAAAGCAGGAACTCAAATCAGACTCTGAGAATCCCAAAAAAAGGA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9793R-1.in silico     421 ATACTGAAGTAGATGCAAAGCAGGAACTCAAATCAGACTCTGAGAATCCCAAAAAAAGGA 480


9793R-1.IR_full       481 GAAATCGTCGAATANCCCCGCG 502
                          |||||||||||| | |||||||
9793R-1.in silico     481 GAAATCGTCGAA-ATCCCCGCG 502



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  0  NM_141567.1  CG9793-RA (CG9793), mRNA 
0.2   1  2  4  3  NM_164619.1  CG31650-RA, transcript variant A (CG31650), mRNA 
0   0  2  4  3  NM_080257.2  CG6815-RA (bor), mRNA 
0   0  2  2  5  NM_001042909.1  CG31619-RC, transcript variant C (CG31619), mRNA 
0   0  2  2  5  NM_165396.1  CG31619-RA, transcript variant A (CG31619), mRNA 
0   0  2  2  4  NM_165397.1  CG31619-RB, transcript variant B (CG31619), mRNA 
0   0  2  2  3  NM_168563.1  CG32137-RB, transcript variant B (CG32137), mRNA 
0   0  2  2  3  NM_136418.2  CG11060-RA (CG11060), mRNA 
0   0  1  6  2  NM_132521.2  CG1578-RA (CG1578), mRNA 
0   0  1  5  19  NM_131995.1  CG15784-RA (CG15784), mRNA 
0   0  1  4  4  NM_078824.2  CG4881-RA, transcript variant A (salr), mRNA 
0   0  1  4  4  NM_164965.1  CG4881-RB, transcript variant B (salr), mRNA 
0   0  1  3  3  NM_140758.2  CG5567-RA (CG5567), mRNA 
0   0  1  3  3  NM_078517.2  CG2175-RA, transcript variant A (dec-1), mRNA 
0   0  1  3  3  NM_167133.1  CG2175-RC, transcript variant C (dec-1), mRNA 
0   0  1  3  3  NM_167132.1  CG2175-RB, transcript variant B (dec-1), mRNA 
0   0  1  3  2  NM_168501.1  CG10638-RA, transcript variant A (CG10638), mRNA 
0   0  0  7  7  NM_134992.2  CG15439-RA (CG15439), mRNA 
0   0  0  6  3  NM_165400.1  CG31612-RA (CG31612), mRNA 
0   0  0  5  6  NM_079808.2  CG5658-RA (Klp98A), mRNA 
0   0  0  5  6  NM_136156.1  CG10463-RA (CG10463), mRNA 
0   0  0  5  4  NM_134714.3  CG4341-RA (CG4341), mRNA 
0   0  0  5  3  NM_135661.2  CG6509-RB, transcript variant B (CG6509), mRNA 
0   0  0  5  3  NM_164967.1  CG6509-RA, transcript variant A (CG6509), mRNA 
0   0  0  4  5  NM_079618.2  CG8599-RA (Su(var)3-7), mRNA 
0   0  0  4  4  NM_079137.2  CG3533-RA (uzip), mRNA 
0   0  0  4  4  NM_165112.1  CG31829-RA (CG31829), mRNA 
0   0  0  4  4  NM_134525.1  CG9571-RA (CG9571), mRNA 
0   0  0  4  3  NM_080049.2  CG11614-RA (nkd), mRNA 
0   0  0  4  3  NM_078713.2  CG17596-RA (S6kII), mRNA 

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