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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 9573R-2 
 Symbol CG9573  Full Name CG9573 
 CG No CG9573  Old CG No CG9573 
 Synonyms CG9573 
 Accession No (Link to NCBI) NM_135425.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGTGTGCTACGCCCTGACTTT 
 Primer Seq. 3'
aatctagaggtaccGATCCGGCAGACACACTCTAA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CGTGTGCTAC GCCCTGACTT TGCTACAGTG CGTCGCCTCG CATCCGGAGA CTCGCCCGGC 
0061 CTTCCTGCGG GACCAGATAC CGATGTACTT GTACCCCTTC TTGTCGACCA CGTTCAAGAG 
0121 CAGGCCCTTC GAGCAGCTGC GCCTGACCAC GCTGGGCGTG ATTAATGCTC TGGCCGAGAC 
0181 CGGTGATACG GAGGTCCTCA TCTTCCTGAT ATGGAGCGAG GTCGTGCCTC ACTGTCTGAC 
0241 CAATATGGTC AGGGGATCGA AGCTGACCAA GATCGCGGCC ACTTCAATCC TTGAGAAGAT 
0301 ACTGCTCGAT GAGATGGGTC TGACGTACAT TTGCGAGAAC CACGATCGCT TCTCGCAGGT 
0361 GGCCATCACC CTGGGCAAAA TGGTCATCCA TATGTTGAAG TTTCCATGCC TCCGGGTGCT 
0421 GAAACATGTG GTGCGCTGCT ATCTACTACT TACGGAAAAT GCGCGCGCTC GCAGTGCACT 
0481 TAGAGTGTGT CTGCCGGATC  
 in silico PCR Fragment
0001 CGTGTGCTAC GCCCTGACTT TGCTACAGTG CGTCGCCTCG CATCCGGAGA CTCGCCCGGC 
0061 CTTCCTGCGG GACCAGATAC CGATGTACTT GTACCCCTTC TTGTCGACCA CGTTCAAGAG 
0121 CAGGCCCTTC GAGCAGCTGC GCCTGACCAC GCTGGGCGTG ATTAATGCTC TGGCCGAGAC 
0181 CGGTGATACG GAGGTCCTCA TCTTCCTGAT ATGGAGCGAG GTCGTGCCTC ACTGTCTGAC 
0241 CAATATGGTC AGGGGATCGA AGCTGACCAA GATCGCGGCC ACTTCAATCC TTGAGAAGAT 
0301 ACTGCTCGAT GAGATGGGTC TGACGTACAT TTGCGAGAAC CACGATCGCT TCTCGCAGGT 
0361 GGCCATCACC CTGGGCAAAA TGGTCATCCA TATGTTGAAG TTTCCATGCC TCCGGGTGCT 
0421 GAAGCATGTG GTGCGCTGCT ATCTACTACT TACGGAAAAT GCGCGCGCTC GCAGTGCACT 
0481 TAGAGTGTGT CTGCCGGATC  
 Assemble Data

9573R-2.IR_full       1   CGTGTGCTACGCCCTGACTTTGCTACAGTGCGTCGCCTCGCATCCGGAGACTCGCCCGGC 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9573R-2.in silico     1   CGTGTGCTACGCCCTGACTTTGCTACAGTGCGTCGCCTCGCATCCGGAGACTCGCCCGGC 60


9573R-2.IR_full       61  CTTCCTGCGGGACCAGATACCGATGTACTTGTACCCCTTCTTGTCGACCACGTTCAAGAG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9573R-2.in silico     61  CTTCCTGCGGGACCAGATACCGATGTACTTGTACCCCTTCTTGTCGACCACGTTCAAGAG 120


9573R-2.IR_full       121 CAGGCCCTTCGAGCAGCTGCGCCTGACCACGCTGGGCGTGATTAATGCTCTGGCCGAGAC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9573R-2.in silico     121 CAGGCCCTTCGAGCAGCTGCGCCTGACCACGCTGGGCGTGATTAATGCTCTGGCCGAGAC 180


9573R-2.IR_full       181 CGGTGATACGGAGGTCCTCATCTTCCTGATATGGAGCGAGGTCGTGCCTCACTGTCTGAC 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9573R-2.in silico     181 CGGTGATACGGAGGTCCTCATCTTCCTGATATGGAGCGAGGTCGTGCCTCACTGTCTGAC 240


9573R-2.IR_full       241 CAATATGGTCAGGGGATCGAAGCTGACCAAGATCGCGGCCACTTCAATCCTTGAGAAGAT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9573R-2.in silico     241 CAATATGGTCAGGGGATCGAAGCTGACCAAGATCGCGGCCACTTCAATCCTTGAGAAGAT 300


9573R-2.IR_full       301 ACTGCTCGATGAGATGGGTCTGACGTACATTTGCGAGAACCACGATCGCTTCTCGCAGGT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9573R-2.in silico     301 ACTGCTCGATGAGATGGGTCTGACGTACATTTGCGAGAACCACGATCGCTTCTCGCAGGT 360


9573R-2.IR_full       361 GGCCATCACCCTGGGCAAAATGGTCATCCATATGTTGAAGTTTCCATGCCTCCGGGTGCT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9573R-2.in silico     361 GGCCATCACCCTGGGCAAAATGGTCATCCATATGTTGAAGTTTCCATGCCTCCGGGTGCT 420


9573R-2.IR_full       421 GAAACATGTGGTGCGCTGCTATCTACTACTTACGGAAAATGCGCGCGCTCGCAGTGCACT 480
                          ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
9573R-2.in silico     421 GAAGCATGTGGTGCGCTGCTATCTACTACTTACGGAAAATGCGCGCGCTCGCAGTGCACT 480


9573R-2.IR_full       481 TAGAGTGTGTCTGCCGGATC 500
                          ||||||||||||||||||||
9573R-2.in silico     481 TAGAGTGTGTCTGCCGGATC 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_135425.2  CG9573-RA (CG9573), mRNA 
100   482  NM_135424.3  CG13102-RA (CG13102), mRNA 
4.35   21  60  69  81  NM_134491.2  CG14213-RB, transcript variant B (CG14213), mRNA 
4.35   21  60  69  81  NM_167675.1  CG14213-RA, transcript variant A (CG14213), mRNA 
0   NM_140259.1  CG5917-RA (CG5917), mRNA 
0   NM_135905.2  CG15260-RA (CG15260), mRNA 
0   10  NM_169232.1  CG8036-RD, transcript variant D (CG8036), mRNA 
0   10  NM_169231.1  CG8036-RC, transcript variant C (CG8036), mRNA 
0   10  NM_141555.1  CG8036-RB, transcript variant B (CG8036), mRNA 
0   14  NM_001014545.1  CG33519-RB (Unc-89), mRNA 
0   NM_136592.1  CG11824-RA (CG11824), mRNA 
0   NM_136940.1  CG8830-RA, transcript variant A (CG8830), mRNA 
0   NM_165900.1  CG8830-RB, transcript variant B (CG8830), mRNA 
0   NM_136917.2  CG8487-RB, transcript variant B (garz), mRNA 
0   NM_078494.2  CG3201-RA (Mlc-c), mRNA 
0   NM_057529.2  CG9325-RA, transcript variant A (hts), mRNA 
0   NM_135540.1  CG5022-RA (CG5022), mRNA 
0   NM_136640.2  CG8801-RA (CG8801), mRNA 
0   NM_057388.2  CG9224-RA (sog), mRNA 
0   NM_001043284.1  CG13602-RB, transcript variant B (CG13602), mRNA 
0   NM_170096.3  CG13602-RA, transcript variant A (CG13602), mRNA 
0   NM_142487.1  CG7709-RA (CG7709), mRNA 
0   NM_143279.2  CG6070-RA (CG6070), mRNA 
0   NM_079217.2  CG10539-RA (S6k), mRNA 
0   NM_140618.1  CG13040-RA (CG13040), mRNA 
0   NM_079509.1  CG2666-RA, transcript variant A (kkv), mRNA 
0   NM_206430.1  CG2666-RC, transcript variant C (kkv), mRNA 
0   NM_169052.1  CG2666-RB, transcript variant B (kkv), mRNA 
0   NM_142605.2  CG4936-RA (CG4936), mRNA 
0   NM_170026.1  CG5264-RA (btn), mRNA 

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