Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
8856R-2 |
Symbol |
Sr-CII |
Full Name |
Scavenger receptor class C, type II |
CG No |
CG8856 |
Old CG No |
CG8856 |
Synonyms |
CG8856, CT25430, dSR-CII, Sr-CII, SR-CII |
Accession No (Link to NCBI) |
NM_079981.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Umetsu D, Dunst S, Dahmann C. An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor. PLoS One (2014) 9(12) e114340
[
PubMed ID = 25473846
]
[
RRC reference
]
Lesch C, Jo J, Wu Y, Fish GS, Galko MJ. A targeted UAS-RNAi screen in Drosophila larvae identifies wound closure genes regulating distinct cellular processes. Genetics (2010) 186(3) 943-57
[
PubMed ID = 20813879
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTTGGATACCGCAAACGGAAGC |
Primer Seq. 3' |
aatctagaggtaccGTGTTTCCAAAGGTGTGATCG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TTGGATACCG CAAACGGAAG CTGCGAAGGA TCGTTAGATT TAGGAAAANT GGACGATTCT
0061 TCACACGATC GAACAATTTA GTGATTTTCC AATGCAATCG CGGATTTGTA TTGCAGGGAA
0121 ATTCAATACA CACCTGCGAT CGGGATGGTC GACTTCGCGA GAAGAAACCA TTTTGTGCCA
0181 GGAAAGGATG CGAGAAGCCT GAGGATCCCA CAAACGGATA TGTTTTAGAT AATCCTGTAA
0241 AGGCGGAAAT CGTGTGTTTA GATGGTTTCG TTCTATACGG AAGTCGCACT GCCTTCTGCG
0301 ATGGAGAAAA GTGGAGCACA CAGCTGGGAG CTTGCCGGAG AAGCAACCAC ACGATGGACC
0361 ACTCCTGCGA CTTCGAGAGC GAGGATCAGT GCGGCTGGTC TGCGGAGGAG ACCATCTGGT
0421 TGCCCTGGAA GAGGATCAGT GCGGTGACGG ATTTTCACCA CCCCAGAACA GGACCACGAT
0481 ACGATCACAC CTTTGGAAAC AC |
in silico PCR Fragment |
0001 TTGGATACCG CAAACGGAAG CTGCGAAGGA TCGTTAGATT T-GGAAAA-T GGACGATTCT
0061 TCACACGATC GAACAATTTA GTGATTTTCC AATGCAATCG CGGATTTGTG TTGCAGGGAA
0121 ATTCAATACA CACCTGCGAT CGGGATGGTC GACTTCGCGA GAAGAAACCA TTTTGTGCCA
0181 GGAAAGGATG CGATAAGCCT GAGGATCCCA CAAACGGATA TGTTTTAGAT AATCCTGTAA
0241 AGGCGGAAAT CGTGTGTTTA GATGGTTTCG TTCTATACGG AAGTCGCACT GCCTTCTGCG
0301 ATGGAGAAAA GTGGAGCACA CAGCTGGGAG CTTGCCGGAG AAGCAACCAC ACGATGGACC
0361 ACTCCTGCGA CTTCGAGAGC GAGGATCAGT GCGGCTGGTC TGCGGAGGAG ACCATCTGGT
0421 TGCCCTGGAA GAGGATCAGT GCGGTGACGG ATTTTCACCA CCCCAGAACA GGACCACGAT
0481 ACGATCACAC CTTTGGAAAC AC |
Assemble Data |
8856R-2.IR_full 1 TTGGATACCGCAAACGGAAGCTGCGAAGGATCGTTAGATTTAGGAAAANTGGACGATTCT 60
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8856R-2.in silico 1 TTGGATACCGCAAACGGAAGCTGCGAAGGATCGTTAGATTT-GGAAAA-TGGACGATTCT 60
8856R-2.IR_full 61 TCACACGATCGAACAATTTAGTGATTTTCCAATGCAATCGCGGATTTGTATTGCAGGGAA 120
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8856R-2.in silico 61 TCACACGATCGAACAATTTAGTGATTTTCCAATGCAATCGCGGATTTGTGTTGCAGGGAA 120
8856R-2.IR_full 121 ATTCAATACACACCTGCGATCGGGATGGTCGACTTCGCGAGAAGAAACCATTTTGTGCCA 180
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8856R-2.in silico 121 ATTCAATACACACCTGCGATCGGGATGGTCGACTTCGCGAGAAGAAACCATTTTGTGCCA 180
8856R-2.IR_full 181 GGAAAGGATGCGAGAAGCCTGAGGATCCCACAAACGGATATGTTTTAGATAATCCTGTAA 240
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8856R-2.in silico 181 GGAAAGGATGCGATAAGCCTGAGGATCCCACAAACGGATATGTTTTAGATAATCCTGTAA 240
8856R-2.IR_full 241 AGGCGGAAATCGTGTGTTTAGATGGTTTCGTTCTATACGGAAGTCGCACTGCCTTCTGCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8856R-2.in silico 241 AGGCGGAAATCGTGTGTTTAGATGGTTTCGTTCTATACGGAAGTCGCACTGCCTTCTGCG 300
8856R-2.IR_full 301 ATGGAGAAAAGTGGAGCACACAGCTGGGAGCTTGCCGGAGAAGCAACCACACGATGGACC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8856R-2.in silico 301 ATGGAGAAAAGTGGAGCACACAGCTGGGAGCTTGCCGGAGAAGCAACCACACGATGGACC 360
8856R-2.IR_full 361 ACTCCTGCGACTTCGAGAGCGAGGATCAGTGCGGCTGGTCTGCGGAGGAGACCATCTGGT 420
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8856R-2.in silico 361 ACTCCTGCGACTTCGAGAGCGAGGATCAGTGCGGCTGGTCTGCGGAGGAGACCATCTGGT 420
8856R-2.IR_full 421 TGCCCTGGAAGAGGATCAGTGCGGTGACGGATTTTCACCACCCCAGAACAGGACCACGAT 480
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8856R-2.in silico 421 TGCCCTGGAAGAGGATCAGTGCGGTGACGGATTTTCACCACCCCAGAACAGGACCACGAT 480
8856R-2.IR_full 481 ACGATCACACCTTTGGAAACAC 502
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8856R-2.in silico 481 ACGATCACACCTTTGGAAACAC 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_079981.2 |
CG40191-PC.3 (CG40191), mRNA, type II CG8856-RA (Sr-CII), mRNA |
1.03 |
5 |
19 |
25 |
53 |
NM_057754.2 |
CG40191-PC.3 (CG40191), mRNA, type II CG8856-RA (Sr-CII), mRNA, type I CG4099-RA (Sr-CI), mRNA |
0 |
0 |
3 |
3 |
4 |
NM_130646.2 |
CG14045-RA (CG14045), mRNA |
0 |
0 |
3 |
2 |
5 |
NM_136013.1 |
CG15148-RA, transcript variant A (btv), mRNA |
0 |
0 |
3 |
2 |
5 |
NM_001042905.1 |
CG15148-RC, transcript variant C (btv), mRNA |
0 |
0 |
3 |
2 |
5 |
NM_001042904.1 |
CG15148-RB, transcript variant B (btv), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_142803.1 |
CG5326-RA, transcript variant A (CG5326), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_170018.1 |
CG5326-RB, transcript variant B (CG5326), mRNA |
0 |
0 |
1 |
3 |
14 |
NM_140067.1 |
CG3654-RD (CG3654), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_132079.1 |
CG15897-RA (CG15897), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_166545.1 |
CG30275-RB, transcript variant B (CG30275), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_176250.1 |
CG30275-RD, transcript variant D (CG30275), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_079022.2 |
CG18372-RA (AttB), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_166551.2 |
CG30267-RA (CG30267), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_139932.2 |
CG7366-RA (CG7366), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_137871.2 |
CG3536-RA (CG3536), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_168484.1 |
CG5684-RB, transcript variant B (Pop2), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_079886.3 |
CG1511-RC, transcript variant C (Eph), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_166774.2 |
CG1511-RD, transcript variant D (Eph), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_166777.2 |
CG1511-RB, transcript variant B (Eph), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_166775.2 |
CG1511-RA, transcript variant A (Eph), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_166776.2 |
CG1511-RE, transcript variant E (Eph), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_135019.1 |
CG15627-RA (CG15627), mRNA |
0 |
0 |
0 |
26 |
29 |
NM_134945.1 |
CG15627-RA (CG15627), mRNA, type IV CG3212-RA (Sr-CIV), mRNA |
0 |
0 |
0 |
6 |
4 |
NM_001014715.1 |
CG33513-RB, transcript variant B (Nmdar2), mRNA |
0 |
0 |
0 |
6 |
4 |
NM_001014714.1 |
CG33513-RC, transcript variant C (Nmdar2), mRNA |
0 |
0 |
0 |
6 |
4 |
NM_001014716.1 |
CG33513-RA, transcript variant A (Nmdar2), mRNA |
0 |
0 |
0 |
5 |
3 |
NM_136202.4 |
CG31678-RA (CG31678), mRNA |
0 |
0 |
0 |
5 |
3 |
NM_001032050.1 |
CG9960-RA, transcript variant A (CG9960), mRNA |
0 |
0 |
0 |
5 |
3 |
NM_164499.1 |
CG9958-RA, transcript variant A (snapin), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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