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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 8856R-1 
 Symbol Sr-CII  Full Name Scavenger receptor class C, type II 
 CG No CG8856  Old CG No CG8856 
 Synonyms CG8856, CT25430, dSR-CII, Sr-CII, SR-CII 
 Accession No (Link to NCBI) NM_079981.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Lesch C, Jo J, Wu Y, Fish GS, Galko MJ.
A targeted UAS-RNAi screen in Drosophila larvae identifies wound closure genes regulating distinct cellular processes.
Genetics (2010) 186(3) 943-57 [ PubMed ID = 20813879 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTTGGATACCGCAAACGGAAGC 
 Primer Seq. 3'
aatctagaggtaccGTGTTTCCAAAGGTGTGATCG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TTGGATACCG CAAACGGAAG CTGCGAAGGA TCGTTAGATT TAGGAAAANT GGACGATTCT 
0061 TCACACGATC GAACAATTTA GTGATTTTCC AATGCAATCG CGGATTTGTA TTGCAGGGAA 
0121 ATTCAATACA CACCTGCGAT CGGGATGGTC GACTTCGCGA GAAGAAACCA TTTTGTGCCA 
0181 GGAAAGGATG CGAGAAGCCT GAGGATCCCA CAAACGGATA TGTTTTAGAT AATCCTGTAA 
0241 AGGCGGAAAT CGTGTGTTTA GATGGTTTCG TTCTATACGG AAGTCGCACT GCCTTCTGCG 
0301 ATGGAGAAAA GTGGAGCACA CAGCTGGGAG CTTGCCGGAG AAGCAACCAC ACGATGGACC 
0361 ACTCCTGCGA CTTCGAGAGC GAGGATCAGT GCGGCTGGTC TGCGGAGGAG ACCATCTGGT 
0421 TGCCCTGGAA GAGGATCAGT GCGGTGACGG ATTTTCACCA CCCCAGAACA GGACCACGAT 
0481 ACGATCACAC CTTTGGAAAC AC 
 in silico PCR Fragment
0001 TTGGATACCG CAAACGGAAG CTGCGAAGGA TCGTTAGATT T-GGAAAA-T GGACGATTCT 
0061 TCACACGATC GAACAATTTA GTGATTTTCC AATGCAATCG CGGATTTGTG TTGCAGGGAA 
0121 ATTCAATACA CACCTGCGAT CGGGATGGTC GACTTCGCGA GAAGAAACCA TTTTGTGCCA 
0181 GGAAAGGATG CGATAAGCCT GAGGATCCCA CAAACGGATA TGTTTTAGAT AATCCTGTAA 
0241 AGGCGGAAAT CGTGTGTTTA GATGGTTTCG TTCTATACGG AAGTCGCACT GCCTTCTGCG 
0301 ATGGAGAAAA GTGGAGCACA CAGCTGGGAG CTTGCCGGAG AAGCAACCAC ACGATGGACC 
0361 ACTCCTGCGA CTTCGAGAGC GAGGATCAGT GCGGCTGGTC TGCGGAGGAG ACCATCTGGT 
0421 TGCCCTGGAA GAGGATCAGT GCGGTGACGG ATTTTCACCA CCCCAGAACA GGACCACGAT 
0481 ACGATCACAC CTTTGGAAAC AC 
 Assemble Data

8856R-1.IR_full       1   TTGGATACCGCAAACGGAAGCTGCGAAGGATCGTTAGATTTAGGAAAANTGGACGATTCT 60
                          ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||
8856R-1.in silico     1   TTGGATACCGCAAACGGAAGCTGCGAAGGATCGTTAGATTT-GGAAAA-TGGACGATTCT 60


8856R-1.IR_full       61  TCACACGATCGAACAATTTAGTGATTTTCCAATGCAATCGCGGATTTGTATTGCAGGGAA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
8856R-1.in silico     61  TCACACGATCGAACAATTTAGTGATTTTCCAATGCAATCGCGGATTTGTGTTGCAGGGAA 120


8856R-1.IR_full       121 ATTCAATACACACCTGCGATCGGGATGGTCGACTTCGCGAGAAGAAACCATTTTGTGCCA 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8856R-1.in silico     121 ATTCAATACACACCTGCGATCGGGATGGTCGACTTCGCGAGAAGAAACCATTTTGTGCCA 180


8856R-1.IR_full       181 GGAAAGGATGCGAGAAGCCTGAGGATCCCACAAACGGATATGTTTTAGATAATCCTGTAA 240
                          ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
8856R-1.in silico     181 GGAAAGGATGCGATAAGCCTGAGGATCCCACAAACGGATATGTTTTAGATAATCCTGTAA 240


8856R-1.IR_full       241 AGGCGGAAATCGTGTGTTTAGATGGTTTCGTTCTATACGGAAGTCGCACTGCCTTCTGCG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8856R-1.in silico     241 AGGCGGAAATCGTGTGTTTAGATGGTTTCGTTCTATACGGAAGTCGCACTGCCTTCTGCG 300


8856R-1.IR_full       301 ATGGAGAAAAGTGGAGCACACAGCTGGGAGCTTGCCGGAGAAGCAACCACACGATGGACC 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8856R-1.in silico     301 ATGGAGAAAAGTGGAGCACACAGCTGGGAGCTTGCCGGAGAAGCAACCACACGATGGACC 360


8856R-1.IR_full       361 ACTCCTGCGACTTCGAGAGCGAGGATCAGTGCGGCTGGTCTGCGGAGGAGACCATCTGGT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8856R-1.in silico     361 ACTCCTGCGACTTCGAGAGCGAGGATCAGTGCGGCTGGTCTGCGGAGGAGACCATCTGGT 420


8856R-1.IR_full       421 TGCCCTGGAAGAGGATCAGTGCGGTGACGGATTTTCACCACCCCAGAACAGGACCACGAT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8856R-1.in silico     421 TGCCCTGGAAGAGGATCAGTGCGGTGACGGATTTTCACCACCCCAGAACAGGACCACGAT 480


8856R-1.IR_full       481 ACGATCACACCTTTGGAAACAC 502
                          ||||||||||||||||||||||
8856R-1.in silico     481 ACGATCACACCTTTGGAAACAC 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_079981.2  CG40191-PC.3 (CG40191), mRNA, type II CG8856-RA (Sr-CII), mRNA 
1.03   19  25  53  NM_057754.2  CG40191-PC.3 (CG40191), mRNA, type II CG8856-RA (Sr-CII), mRNA, type I CG4099-RA (Sr-CI), mRNA 
0   NM_130646.2  CG14045-RA (CG14045), mRNA 
0   NM_136013.1  CG15148-RA, transcript variant A (btv), mRNA 
0   NM_001042905.1  CG15148-RC, transcript variant C (btv), mRNA 
0   NM_001042904.1  CG15148-RB, transcript variant B (btv), mRNA 
0   NM_142803.1  CG5326-RA, transcript variant A (CG5326), mRNA 
0   NM_170018.1  CG5326-RB, transcript variant B (CG5326), mRNA 
0   14  NM_140067.1  CG3654-RD (CG3654), mRNA 
0   NM_132079.1  CG15897-RA (CG15897), mRNA 
0   NM_166545.1  CG30275-RB, transcript variant B (CG30275), mRNA 
0   NM_176250.1  CG30275-RD, transcript variant D (CG30275), mRNA 
0   NM_079022.2  CG18372-RA (AttB), mRNA 
0   NM_166551.2  CG30267-RA (CG30267), mRNA 
0   NM_139932.2  CG7366-RA (CG7366), mRNA 
0   NM_137871.2  CG3536-RA (CG3536), mRNA 
0   NM_168484.1  CG5684-RB, transcript variant B (Pop2), mRNA 
0   NM_079886.3  CG1511-RC, transcript variant C (Eph), mRNA 
0   NM_166774.2  CG1511-RD, transcript variant D (Eph), mRNA 
0   NM_166777.2  CG1511-RB, transcript variant B (Eph), mRNA 
0   NM_166775.2  CG1511-RA, transcript variant A (Eph), mRNA 
0   NM_166776.2  CG1511-RE, transcript variant E (Eph), mRNA 
0   NM_135019.1  CG15627-RA (CG15627), mRNA 
0   26  29  NM_134945.1  CG15627-RA (CG15627), mRNA, type IV CG3212-RA (Sr-CIV), mRNA 
0   NM_001014715.1  CG33513-RB, transcript variant B (Nmdar2), mRNA 
0   NM_001014714.1  CG33513-RC, transcript variant C (Nmdar2), mRNA 
0   NM_001014716.1  CG33513-RA, transcript variant A (Nmdar2), mRNA 
0   NM_136202.4  CG31678-RA (CG31678), mRNA 
0   NM_001032050.1  CG9960-RA, transcript variant A (CG9960), mRNA 
0   NM_164499.1  CG9958-RA, transcript variant A (snapin), mRNA 

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