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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 8652R-3 
 Symbol Ugt37c1  Full Name UDP-glycosyltransferase 37c1 
 CG No CG8652  Old CG No CG8652 
 Synonyms EG:EG0003.4, AC 004641A, LD15335, DmeUgt37c1, CG8652, Ugt37c1 
 Accession No (Link to NCBI) NM_080268.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgACACCAGGCAATGCCTCAAAT 
 Primer Seq. 3'
aatctagaggtaccAGCCGGGTTAGGAAAACTAAG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ACACCAGGCA ATGCCTCAAA TATTTTCTAC AAGGACTGGC TGCCCCAAGA TGATATCCTG 
0061 GCACATCCGA ATACCAAACT CTTTGTCACA CATGCCGGCA AGGGCAGCAT CACCGAATCC 
0121 CAGTATCATG GTGTCCCAAT GGTGGCACTG CCCATTTTCG GTGACCATCC ATTGAATGCG 
0181 GCTCTAATGG TAAACTTCGG GATATGGCGT TTCACTTGAT TTGCAGACCA TCACCGAAGA 
0241 TACTTTCCGC GAGGCCATCA ACGAAGTCCT GGAAAATGAC AAGTACACTC AAGCGGTTCG 
0301 CAAATTCTCC NCCCTTTACA GGGATCGACC TTTAACTCCC AGGCAATCTG TTCTTTTCTG 
0361 GGTGGATTAC GTTCTGAGGC ATCATGGTGC TCCCAATTTG CAGAGTCCAN CGGTGCACAT 
0421 GGGATTTGTT GAGCTACACA ACTTGGATAT CTACGCCTTG GTGCTTGCGA TCCTGATATT 
0481 CTTAGTTTTC CTAACCCGGC T 
 in silico PCR Fragment
0001 ACACCAGGCA ATGCCTCAAA TATTTTCTAC AAGGACTGGC TGCCCCAAGA TGATATCCTG 
0061 GCACATCCGA ATACCAAACT CTTTGTCACA CATGCCGGCA AGGGCAGCAT CACCGAATCC 
0121 CAGTATCATG GTGTCCCAAT GGTGGCACTG CCCATTTTCG GTGACCATCC ATTGAATGCG 
0181 GCTCTAATGG TAAA-TTCGG GATATGGCGT TTCACTTGAT TTGCAGACCA TCACCGAAGA 
0241 TACTTTCCGC GAGGCCATCA ACGAAGTCCT GGAAAATGAC AAGTACACTC AAGCGGTTCG 
0301 CAAATTCTCC GCCCTTTACA GGGATCGACC TTTAACTCCC AGGCAATCTG TTCTTTTCTG 
0361 GGTGGATTAC GTTCTGAGGC ATCATGGTGC TCCCAATTTG CAGAGTCCAG CGGTGCACAT 
0421 GGGATTTGTT GAGCTACACA ACTTGGATAT CTACGCCTTG GTGCTTGCGA TCCTGATATT 
0481 CTTAGTTTTC CTAACCCGGC T 
 Assemble Data

8652R-3.IR_full       1   ACACCAGGCAATGCCTCAAATATTTTCTACAAGGACTGGCTGCCCCAAGATGATATCCTG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8652R-3.in silico     1   ACACCAGGCAATGCCTCAAATATTTTCTACAAGGACTGGCTGCCCCAAGATGATATCCTG 60


8652R-3.IR_full       61  GCACATCCGAATACCAAACTCTTTGTCACACATGCCGGCAAGGGCAGCATCACCGAATCC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8652R-3.in silico     61  GCACATCCGAATACCAAACTCTTTGTCACACATGCCGGCAAGGGCAGCATCACCGAATCC 120


8652R-3.IR_full       121 CAGTATCATGGTGTCCCAATGGTGGCACTGCCCATTTTCGGTGACCATCCATTGAATGCG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8652R-3.in silico     121 CAGTATCATGGTGTCCCAATGGTGGCACTGCCCATTTTCGGTGACCATCCATTGAATGCG 180


8652R-3.IR_full       181 GCTCTAATGGTAAACTTCGGGATATGGCGTTTCACTTGATTTGCAGACCATCACCGAAGA 240
                          |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
8652R-3.in silico     181 GCTCTAATGGTAAA-TTCGGGATATGGCGTTTCACTTGATTTGCAGACCATCACCGAAGA 240


8652R-3.IR_full       241 TACTTTCCGCGAGGCCATCAACGAAGTCCTGGAAAATGACAAGTACACTCAAGCGGTTCG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8652R-3.in silico     241 TACTTTCCGCGAGGCCATCAACGAAGTCCTGGAAAATGACAAGTACACTCAAGCGGTTCG 300


8652R-3.IR_full       301 CAAATTCTCCNCCCTTTACAGGGATCGACCTTTAACTCCCAGGCAATCTGTTCTTTTCTG 360
                          |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
8652R-3.in silico     301 CAAATTCTCCGCCCTTTACAGGGATCGACCTTTAACTCCCAGGCAATCTGTTCTTTTCTG 360


8652R-3.IR_full       361 GGTGGATTACGTTCTGAGGCATCATGGTGCTCCCAATTTGCAGAGTCCANCGGTGCACAT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
8652R-3.in silico     361 GGTGGATTACGTTCTGAGGCATCATGGTGCTCCCAATTTGCAGAGTCCAGCGGTGCACAT 420


8652R-3.IR_full       421 GGGATTTGTTGAGCTACACAACTTGGATATCTACGCCTTGGTGCTTGCGATCCTGATATT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
8652R-3.in silico     421 GGGATTTGTTGAGCTACACAACTTGGATATCTACGCCTTGGTGCTTGCGATCCTGATATT 480


8652R-3.IR_full       481 CTTAGTTTTCCTAACCCGGCT 501
                          |||||||||||||||||||||
8652R-3.in silico     481 CTTAGTTTTCCTAACCCGGCT 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_080268.1  CG8652-RA (Ugt37c1), mRNA 
0.62   24  35  33  NM_144372.1  CG13270-RA (Ugt36Ba), mRNA 
0   25  26  NM_144371.1  CG13271-RA (Ugt36Bb), mRNA 
0   NM_140844.1  CG14085-RA, transcript variant A (CG14085), mRNA 
0   NM_176350.1  CG14085-RB, transcript variant B (CG14085), mRNA 
0   NM_136926.1  CG13155-RA (CG13155), mRNA 
0   17  23  NM_165193.1  CG17932-RB, transcript variant B (Ugt36Bc), mRNA 
0   17  23  NM_144370.2  CG17932-RA, transcript variant A (Ugt36Bc), mRNA 
0   19  NM_080269.2  CG9481-RA (Ugt37b1), mRNA 
0   NM_057262.2  CG1828-RA, transcript variant A (dre4), mRNA 
0   NM_167922.1  CG1828-RB, transcript variant B (dre4), mRNA 
0   NM_137585.2  CG11007-RA (CG11007), mRNA 
0   NM_136961.1  CG8778-RA (CG8778), mRNA 
0   NM_167095.1  CG32743-RA (Smg1), mRNA 
0   NM_135525.1  CG5604-RA (CG5604), mRNA 
0   NM_079395.2  CG9695-RA (Dab), mRNA 
0   NM_078883.1  CG11012-RA (Ugt37a1), mRNA 
0   NM_001031952.1  CG11714-RA, transcript variant A (CG11714), mRNA 
0   NM_001031953.1  CG6128-RA, transcript variant A (CG6128), mRNA 
0   NM_140945.1  CG6480-RA (CG6480), mRNA 
0   NM_142340.2  CG5148-RA (CG5148), mRNA 
0   NM_135207.2  CG11319-RA (CG11319), mRNA 
0   NM_135853.2  CG18095-RA (CG18095), mRNA 
0   NM_137589.2  CG16716-RB, transcript variant B (CG16716), mRNA 
0   NM_166371.1  CG16716-RA, transcript variant A (CG16716), mRNA 
0   NM_136517.2  CG8707-RA (CG8707), mRNA 
0   NM_142930.2  CG10198-RA (Nup98), mRNA 
0   NM_206570.1  CG10772-RF, transcript variant F (Fur1), mRNA 
0   NM_168227.2  CG7462-RB, transcript variant B (Ank2), mRNA 
0   NM_139891.3  CG7462-RC, transcript variant C (Ank2), mRNA 

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