Notice:
|
Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
|
|
NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
discarded
|
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
7815R-4 |
Symbol |
ran-like |
Full Name |
ran-like |
CG No |
CG7815 |
Old CG No |
CG7815 |
Synonyms |
CG7815, BcDNA:GH25818, anon-WO0140519.150, ran-like, Ran-like |
Accession No (Link to NCBI) |
NM_079358.2 |
Inserted Chr. |
ll |
Insertional Mutation |
|
Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
|
Reference
[Please submit your publication]
|
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
|
Comment |
|
Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgATGCAACCTCAAGAGGAAGTG |
Primer Seq. 3' |
aatctagaggtaccCGCAATAGATAGACGAATGGC |
Predicted Fragment Size |
497 |
IR fragment full Seq |
0001 ATGCAACCTC AAGAGGAAGT GAAGGCCATT TTCAAGCTGA TTCTAATCGG AGACGGGGGA
0061 ACTGGGAAAA CCACATTGGT CAAGCGACAT CTGACCGGCG AGTTCAAGAT GCAATACAAT
0121 GCGACCTTGG GTGTGGAGGT CGAGCAATTA CTGTTTAACA CCAACAGAGG AGTTTTCCGC
0181 ATCGATGTTT GGGACACTGC CGGTCAGGAG AGGTACGGTG GCCTGCGCGA TGGGTACTTC
0241 GTCCAATCAC AATGTGCCAT AATAATGTTC GATGTGGCCT CGTCAAATAC ATATAATAAT
0301 GTGAAAANGA TGGCACCGCG ACTTGGTGAG AGTATGCGGC AACATACCGA TTGTCATTTG
0361 TGGCAACAAG GTGGATATCA TGCATAAAAA GACTTGGAAA AAGGGTGTTG ACTTTGATCG
0421 CAAGACAAAC ATTTACCTCA TTGAAATGTC CGCAAAGTCG AACTATAACG TGGAGAAGCC
0481 ATTCGTCTAT CTATTGCG |
in silico PCR Fragment |
0001 ATGCAACCTC AAGAGGAAGT GAAGGCCATT TTCAAGCTGA TTCTAATCGG AGACGGGGGA
0061 ACTGGGAAAA CCACATTGGT CAAGCGACAT CTGACCGGCG AGTTCAAGAT GCAATACAAT
0121 GCGACCTTGG GTGTGGAGGT CGAGCAATTA CTGTTTAACA CCAACAGAGG AGTTTTCCGC
0181 ATCGATGTTT GGGACACTGC CGGTCAGGAG AGGTACGGTG GCCTGCGCGA TGGGTACTTC
0241 GTCCAATCAC AATGTGCCAT AATAATGTTC GATGTGGCCT CGTCAAATAC ATATAATAAT
0301 GTGAAAA-GA TGGCACCGCG ACTTGGTGAG AGTATGCGGC AACATACCGA TTGTCATTTG
0361 TGGCAACAAG GTGGATATCA TGCATAAAAA GACTTGGAAA AAGGGTGTTG ACTTTGATCG
0421 CAAGACAAAC ATTTACCTCA TTGAAATGTC CGCAAAGTCG AACTATAACG TGGAGAAGCC
0481 ATTCGTCTAT CTATTGCG |
Assemble Data |
7815R-4.IR_full 1 ATGCAACCTCAAGAGGAAGTGAAGGCCATTTTCAAGCTGATTCTAATCGGAGACGGGGGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7815R-4.in silico 1 ATGCAACCTCAAGAGGAAGTGAAGGCCATTTTCAAGCTGATTCTAATCGGAGACGGGGGA 60
7815R-4.IR_full 61 ACTGGGAAAACCACATTGGTCAAGCGACATCTGACCGGCGAGTTCAAGATGCAATACAAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7815R-4.in silico 61 ACTGGGAAAACCACATTGGTCAAGCGACATCTGACCGGCGAGTTCAAGATGCAATACAAT 120
7815R-4.IR_full 121 GCGACCTTGGGTGTGGAGGTCGAGCAATTACTGTTTAACACCAACAGAGGAGTTTTCCGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7815R-4.in silico 121 GCGACCTTGGGTGTGGAGGTCGAGCAATTACTGTTTAACACCAACAGAGGAGTTTTCCGC 180
7815R-4.IR_full 181 ATCGATGTTTGGGACACTGCCGGTCAGGAGAGGTACGGTGGCCTGCGCGATGGGTACTTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7815R-4.in silico 181 ATCGATGTTTGGGACACTGCCGGTCAGGAGAGGTACGGTGGCCTGCGCGATGGGTACTTC 240
7815R-4.IR_full 241 GTCCAATCACAATGTGCCATAATAATGTTCGATGTGGCCTCGTCAAATACATATAATAAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7815R-4.in silico 241 GTCCAATCACAATGTGCCATAATAATGTTCGATGTGGCCTCGTCAAATACATATAATAAT 300
7815R-4.IR_full 301 GTGAAAANGATGGCACCGCGACTTGGTGAGAGTATGCGGCAACATACCGATTGTCATTTG 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
7815R-4.in silico 301 GTGAAAA-GATGGCACCGCGACTTGGTGAGAGTATGCGGCAACATACCGATTGTCATTTG 360
7815R-4.IR_full 361 TGGCAACAAGGTGGATATCATGCATAAAAAGACTTGGAAAAAGGGTGTTGACTTTGATCG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7815R-4.in silico 361 TGGCAACAAGGTGGATATCATGCATAAAAAGACTTGGAAAAAGGGTGTTGACTTTGATCG 420
7815R-4.IR_full 421 CAAGACAAACATTTACCTCATTGAAATGTCCGCAAAGTCGAACTATAACGTGGAGAAGCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
7815R-4.in silico 421 CAAGACAAACATTTACCTCATTGAAATGTCCGCAAAGTCGAACTATAACGTGGAGAAGCC 480
7815R-4.IR_full 481 ATTCGTCTATCTATTGCG 498
||||||||||||||||||
7815R-4.in silico 481 ATTCGTCTATCTATTGCG 498
|
Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
479 |
0 |
0 |
0 |
NM_079358.2 |
CG7815-RA (ran-like), mRNA |
0 |
0 |
7 |
3 |
2 |
NM_079246.3 |
CG7062-RA (Rab-RP3), mRNA |
0 |
0 |
5 |
4 |
5 |
NM_206155.1 |
CG4921-RC, transcript variant C (Rab4), mRNA |
0 |
0 |
5 |
4 |
5 |
NM_166240.1 |
CG4921-RA, transcript variant A (Rab4), mRNA |
0 |
0 |
5 |
4 |
5 |
NM_079053.2 |
CG4921-RB, transcript variant B (Rab4), mRNA |
0 |
0 |
3 |
4 |
4 |
NM_079448.2 |
CG8287-RA (Rab8), mRNA |
0 |
0 |
3 |
4 |
3 |
NM_139387.1 |
CG7980-RA (RabX5), mRNA |
0 |
0 |
3 |
3 |
2 |
NM_079568.2 |
CG9366-RA (RhoL), mRNA |
0 |
0 |
2 |
3 |
3 |
NM_079748.2 |
CG5915-RA (Rab7), mRNA |
0 |
0 |
1 |
5 |
4 |
NM_143288.2 |
CG31064-RE, transcript variant E (CG31064), mRNA |
0 |
0 |
1 |
5 |
4 |
NM_170325.1 |
CG31064-RA, transcript variant A (CG31064), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_142497.2 |
CG18208-RA (CG18208), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_164430.2 |
CG31666-RD, transcript variant D (CG31666), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_134766.3 |
CG31666-RA, transcript variant A (CG31666), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_164428.2 |
CG31666-RB, transcript variant B (CG31666), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_164429.1 |
CG31666-RC, transcript variant C (CG31666), mRNA |
0 |
0 |
0 |
7 |
16 |
NM_144448.2 |
CG1915-RC, transcript variant C (sls), mRNA |
0 |
0 |
0 |
5 |
39 |
NM_143712.2 |
CG1404-RA, transcript variant A (ran), mRNA |
0 |
0 |
0 |
5 |
39 |
NM_167272.1 |
CG1404-RB, transcript variant B (ran), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_001042856.1 |
CG17515-RB, transcript variant B (Rab21), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_001042857.1 |
CG17515-RA, transcript variant A (Rab21), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_138260.4 |
CG2199-RA, transcript variant A (CG2199), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_167873.1 |
CG2199-RB, transcript variant B (CG2199), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_079494.3 |
CG8779-RA, transcript variant A (nrm), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_137622.2 |
CG11788-RA (CG11788), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_001043156.1 |
CG8779-RB, transcript variant B (nrm), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_139797.2 |
CG8519-RA (CG8519), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_137759.3 |
CG30263-RA (CG30263), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_169059.1 |
CG2902-RA (Nmdar1), mRNA |
0 |
0 |
0 |
3 |
12 |
NM_080370.3 |
CG8024-RB, transcript variant B (ltd), mRNA |
|
Wing Disc |
GFP
|
Puc
|
Caspase
|
DAPI
|
Merge
|
Figure
|
JNK signal
|
Caspase-3 signal
|
|
|
|
|