Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
4478R-2 |
Symbol |
Mst35Bb |
Full Name |
Male-specific-transcript-35Bb |
CG No |
CG4478 |
Old CG No |
CG4478 |
Synonyms |
BG:DS03431.3, mst35b, CG4478, BcDNA:GH11850, Mst35Bb |
Accession No (Link to NCBI) |
NM_057703.3 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGTGCAAGAGCCTGTGGAATGG |
Primer Seq. 3' |
aatctagaggtaccGCAAATCCGTCGGCGCTTGTG |
Predicted Fragment Size |
406 |
IR fragment full Seq |
0001 GTGCAAGAGC CTGTGGAATG GCATAATTTC CATTTCTGCA AAAGATGAAA GTCCTAAAGG
0061 TCTCACTGAA ATGTGTAATC ATCCAAAGAG GAGAGCACCG GCCCAAATGT AAGCCAATGA
0121 AGTCCTGTGC AANAGCCGCG CCGAAAGGCA GCCTGTGCCA AGGCGACTCG GCCCAAGGTC
0181 AAGTGTGCAC CGAGTCAGAA GTGCAGCAAG CAGGGACCTG TCACTAACAA CGCCTATTTG
0241 AATTTCGTGC GTTTCTTCCG AAAGAAGCAC TGTGACTTGA AGCCGCAGGA ATTAATTGCA
0301 GAGGCCGCTA AAGCGTGGGC CGAGCTCCCG GAGCATAGAA AGGATAGATA CCGCCGGATG
0361 GCATGCAAGG TCACCACCAG TGAACGCCAC AAGCGCCGAC GGATTTGC |
in silico PCR Fragment |
0001 GTGCAAGAGC CTGTGGAATG GCATAATTTC CATTTCTGCA AAAGATGAAA GTCCTAAAGG
0061 TCTCACTGAA ATGTGTAATC ATCCAAAGAG GAGAGCACC- GCCCAAATGT AAGCCAATGA
0121 AGTCCTGTGC AA-AGCCGCG CCGAAAGGCA GCCTGTGCCA AGGCGACTCG GCCCAAGGTC
0181 AAGTGTGCAC CGAGTCAGAA GTGCAGCAAG CAGGGACCTG TCACTAACAA CGCCTATTTG
0241 AATTTCGTGC GTTTCTTCCG AAAGAAGCAC TGTGACTTGA AGCCGCAGGA ATTAATTGCA
0301 GAGGCCGCTA AAGCGTGGGC CGAGCTCCCG GAGCATAGAA AGGATAGATA CCGCCGGATG
0361 GCATGCAAGG TCACCACCAG TGAACGCCAC AAGCGCCGAC GGATTTGC |
Assemble Data |
4478R-2.IR_full 1 GTGCAAGAGCCTGTGGAATGGCATAATTTCCATTTCTGCAAAAGATGAAAGTCCTAAAGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4478R-2.in silico 1 GTGCAAGAGCCTGTGGAATGGCATAATTTCCATTTCTGCAAAAGATGAAAGTCCTAAAGG 60
4478R-2.IR_full 61 TCTCACTGAAATGTGTAATCATCCAAAGAGGAGAGCACCGGCCCAAATGTAAGCCAATGA 120
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4478R-2.in silico 61 TCTCACTGAAATGTGTAATCATCCAAAGAGGAGAGCACC-GCCCAAATGTAAGCCAATGA 120
4478R-2.IR_full 121 AGTCCTGTGCAANAGCCGCGCCGAAAGGCAGCCTGTGCCAAGGCGACTCGGCCCAAGGTC 180
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4478R-2.in silico 121 AGTCCTGTGCAA-AGCCGCGCCGAAAGGCAGCCTGTGCCAAGGCGACTCGGCCCAAGGTC 180
4478R-2.IR_full 181 AAGTGTGCACCGAGTCAGAAGTGCAGCAAGCAGGGACCTGTCACTAACAACGCCTATTTG 240
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4478R-2.in silico 181 AAGTGTGCACCGAGTCAGAAGTGCAGCAAGCAGGGACCTGTCACTAACAACGCCTATTTG 240
4478R-2.IR_full 241 AATTTCGTGCGTTTCTTCCGAAAGAAGCACTGTGACTTGAAGCCGCAGGAATTAATTGCA 300
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4478R-2.in silico 241 AATTTCGTGCGTTTCTTCCGAAAGAAGCACTGTGACTTGAAGCCGCAGGAATTAATTGCA 300
4478R-2.IR_full 301 GAGGCCGCTAAAGCGTGGGCCGAGCTCCCGGAGCATAGAAAGGATAGATACCGCCGGATG 360
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4478R-2.in silico 301 GAGGCCGCTAAAGCGTGGGCCGAGCTCCCGGAGCATAGAAAGGATAGATACCGCCGGATG 360
4478R-2.IR_full 361 GCATGCAAGGTCACCACCAGTGAACGCCACAAGCGCCGACGGATTTGC 408
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4478R-2.in silico 361 GCATGCAAGGTCACCACCAGTGAACGCCACAAGCGCCGACGGATTTGC 408
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
388 |
0 |
0 |
0 |
NM_057703.3 |
CG4478-RA (Mst35Bb), mRNA |
56.18 |
218 |
72 |
58 |
28 |
NM_057702.4 |
CG4479-RA (Mst35Ba), mRNA |
0.51 |
2 |
3 |
2 |
4 |
NM_143372.1 |
CG9995-RA (htt), mRNA |
0 |
0 |
4 |
2 |
4 |
NM_136446.2 |
CG1603-RA (CG1603), mRNA |
0 |
0 |
2 |
2 |
6 |
NM_135967.1 |
CG13272-RA (CG13272), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_142734.1 |
CG6656-RA (CG6656), mRNA |
0 |
0 |
1 |
2 |
7 |
NM_132778.1 |
CG9095-RA (CG9095), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_135363.2 |
CG7806-RA (CG7806), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_057941.3 |
CG5227-RA, transcript variant A (sdk), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_134314.2 |
CG5227-RB, transcript variant B (sdk), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_134315.2 |
CG5227-RD, transcript variant D (sdk), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_057942.3 |
CG5227-RC, transcript variant C (sdk), mRNA |
0 |
0 |
0 |
8 |
6 |
NM_132130.1 |
CG12796-RA (CG12796), mRNA |
0 |
0 |
0 |
8 |
3 |
NM_137084.2 |
CG8241-RA (CG8241), mRNA |
0 |
0 |
0 |
5 |
11 |
NM_165139.1 |
CG4793-RC, transcript variant C (CG4793), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_001043085.1 |
CG34123-RC, transcript variant C (CG34123), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_001043083.1 |
CG34123-RB, transcript variant B (CG34123), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_001043084.1 |
CG34123-RD, transcript variant D (CG34123), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_167646.1 |
CG32827-RA (CG32827), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_001014552.1 |
CG15792-RD, transcript variant D (zip), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_079136.2 |
CG15792-RA, transcript variant A (zip), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_001014553.1 |
CG15792-RC, transcript variant C (zip), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_166704.1 |
CG15792-RB, transcript variant B (zip), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_057607.4 |
CG8385-RB, transcript variant B (Arf79F), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_139366.2 |
CG12099-RB, transcript variant B (CG12099), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_167895.1 |
CG12099-RA, transcript variant A (CG12099), mRNA |
0 |
0 |
0 |
3 |
9 |
NM_080306.2 |
CG3443-RB (pcx), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_057733.3 |
CG5210-RA (Chit), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_132335.2 |
CG12139-RB (CG12139), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_136319.3 |
CG2682-RA, transcript variant A (d4), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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++ |
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DM |
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+ |
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VM |
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VB |
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