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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 4478R-1 
 Symbol Mst35Bb  Full Name Male-specific-transcript-35Bb 
 CG No CG4478  Old CG No CG4478 
 Synonyms BG:DS03431.3, mst35b, CG4478, BcDNA:GH11850, Mst35Bb 
 Accession No (Link to NCBI) NM_057703.3 
 Inserted Chr. ll 
 Insertional Mutation  semi-lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGTGCAAGAGCCTGTGGAATGG 
 Primer Seq. 3'
aatctagaggtaccGCAAATCCGTCGGCGCTTGTG 
 Predicted Fragment Size
406 
 IR fragment full Seq
0001 GTGCAAGAGC CTGTGGAATG GCATAATTTC CATTTCTGCA AAAGATGAAA GTCCTAAAGG 
0061 TCTCACTGAA ATGTGTAATC ATCCAAAGAG GAGAGCACCG GCCCAAATGT AAGCCAATGA 
0121 AGTCCTGTGC AANAGCCGCG CCGAAAGGCA GCCTGTGCCA AGGCGACTCG GCCCAAGGTC 
0181 AAGTGTGCAC CGAGTCAGAA GTGCAGCAAG CAGGGACCTG TCACTAACAA CGCCTATTTG 
0241 AATTTCGTGC GTTTCTTCCG AAAGAAGCAC TGTGACTTGA AGCCGCAGGA ATTAATTGCA 
0301 GAGGCCGCTA AAGCGTGGGC CGAGCTCCCG GAGCATAGAA AGGATAGATA CCGCCGGATG 
0361 GCATGCAAGG TCACCACCAG TGAACGCCAC AAGCGCCGAC GGATTTGC 
 in silico PCR Fragment
0001 GTGCAAGAGC CTGTGGAATG GCATAATTTC CATTTCTGCA AAAGATGAAA GTCCTAAAGG 
0061 TCTCACTGAA ATGTGTAATC ATCCAAAGAG GAGAGCACC- GCCCAAATGT AAGCCAATGA 
0121 AGTCCTGTGC AA-AGCCGCG CCGAAAGGCA GCCTGTGCCA AGGCGACTCG GCCCAAGGTC 
0181 AAGTGTGCAC CGAGTCAGAA GTGCAGCAAG CAGGGACCTG TCACTAACAA CGCCTATTTG 
0241 AATTTCGTGC GTTTCTTCCG AAAGAAGCAC TGTGACTTGA AGCCGCAGGA ATTAATTGCA 
0301 GAGGCCGCTA AAGCGTGGGC CGAGCTCCCG GAGCATAGAA AGGATAGATA CCGCCGGATG 
0361 GCATGCAAGG TCACCACCAG TGAACGCCAC AAGCGCCGAC GGATTTGC 
 Assemble Data

4478R-1.IR_full       1   GTGCAAGAGCCTGTGGAATGGCATAATTTCCATTTCTGCAAAAGATGAAAGTCCTAAAGG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4478R-1.in silico     1   GTGCAAGAGCCTGTGGAATGGCATAATTTCCATTTCTGCAAAAGATGAAAGTCCTAAAGG 60


4478R-1.IR_full       61  TCTCACTGAAATGTGTAATCATCCAAAGAGGAGAGCACCGGCCCAAATGTAAGCCAATGA 120
                          ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
4478R-1.in silico     61  TCTCACTGAAATGTGTAATCATCCAAAGAGGAGAGCACC-GCCCAAATGTAAGCCAATGA 120


4478R-1.IR_full       121 AGTCCTGTGCAANAGCCGCGCCGAAAGGCAGCCTGTGCCAAGGCGACTCGGCCCAAGGTC 180
                          |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
4478R-1.in silico     121 AGTCCTGTGCAA-AGCCGCGCCGAAAGGCAGCCTGTGCCAAGGCGACTCGGCCCAAGGTC 180


4478R-1.IR_full       181 AAGTGTGCACCGAGTCAGAAGTGCAGCAAGCAGGGACCTGTCACTAACAACGCCTATTTG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4478R-1.in silico     181 AAGTGTGCACCGAGTCAGAAGTGCAGCAAGCAGGGACCTGTCACTAACAACGCCTATTTG 240


4478R-1.IR_full       241 AATTTCGTGCGTTTCTTCCGAAAGAAGCACTGTGACTTGAAGCCGCAGGAATTAATTGCA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4478R-1.in silico     241 AATTTCGTGCGTTTCTTCCGAAAGAAGCACTGTGACTTGAAGCCGCAGGAATTAATTGCA 300


4478R-1.IR_full       301 GAGGCCGCTAAAGCGTGGGCCGAGCTCCCGGAGCATAGAAAGGATAGATACCGCCGGATG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4478R-1.in silico     301 GAGGCCGCTAAAGCGTGGGCCGAGCTCCCGGAGCATAGAAAGGATAGATACCGCCGGATG 360


4478R-1.IR_full       361 GCATGCAAGGTCACCACCAGTGAACGCCACAAGCGCCGACGGATTTGC 408
                          ||||||||||||||||||||||||||||||||||||||||||||||||
4478R-1.in silico     361 GCATGCAAGGTCACCACCAGTGAACGCCACAAGCGCCGACGGATTTGC 408

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   388  NM_057703.3  CG4478-RA (Mst35Bb), mRNA 
56.18   218  72  58  28  NM_057702.4  CG4479-RA (Mst35Ba), mRNA 
0.51   NM_143372.1  CG9995-RA (htt), mRNA 
0   NM_136446.2  CG1603-RA (CG1603), mRNA 
0   NM_135967.1  CG13272-RA (CG13272), mRNA 
0   NM_142734.1  CG6656-RA (CG6656), mRNA 
0   NM_132778.1  CG9095-RA (CG9095), mRNA 
0   NM_135363.2  CG7806-RA (CG7806), mRNA 
0   NM_057941.3  CG5227-RA, transcript variant A (sdk), mRNA 
0   NM_134314.2  CG5227-RB, transcript variant B (sdk), mRNA 
0   NM_134315.2  CG5227-RD, transcript variant D (sdk), mRNA 
0   NM_057942.3  CG5227-RC, transcript variant C (sdk), mRNA 
0   NM_132130.1  CG12796-RA (CG12796), mRNA 
0   NM_137084.2  CG8241-RA (CG8241), mRNA 
0   11  NM_165139.1  CG4793-RC, transcript variant C (CG4793), mRNA 
0   NM_001043085.1  CG34123-RC, transcript variant C (CG34123), mRNA 
0   NM_001043083.1  CG34123-RB, transcript variant B (CG34123), mRNA 
0   NM_001043084.1  CG34123-RD, transcript variant D (CG34123), mRNA 
0   NM_167646.1  CG32827-RA (CG32827), mRNA 
0   NM_001014552.1  CG15792-RD, transcript variant D (zip), mRNA 
0   NM_079136.2  CG15792-RA, transcript variant A (zip), mRNA 
0   NM_001014553.1  CG15792-RC, transcript variant C (zip), mRNA 
0   NM_166704.1  CG15792-RB, transcript variant B (zip), mRNA 
0   NM_057607.4  CG8385-RB, transcript variant B (Arf79F), mRNA 
0   NM_139366.2  CG12099-RB, transcript variant B (CG12099), mRNA 
0   NM_167895.1  CG12099-RA, transcript variant A (CG12099), mRNA 
0   NM_080306.2  CG3443-RB (pcx), mRNA 
0   NM_057733.3  CG5210-RA (Chit), mRNA 
0   NM_132335.2  CG12139-RB (CG12139), mRNA 
0   NM_136319.3  CG2682-RA, transcript variant A (d4), mRNA 

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