Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
4375R-1 |
Symbol |
CG4375 |
Full Name |
CG4375 |
CG No |
CG4375 |
Old CG No |
CG4375 |
Synonyms |
BcDNA:AT13819, CG4375 |
Accession No (Link to NCBI) |
NM_164402.1 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGATTTAAAACCCGCGTCCTTC |
Primer Seq. 3' |
aatctagaggtaccAAGGCACTACTGCGACTATGA |
Predicted Fragment Size |
485 |
IR fragment full Seq |
0001 NATTTAAAAC CCGCGTCCTT CGAAGACTTG GCCAATCAGG TGTTCGAAAA GTCGAAACAG
0061 ATGAGTATGT CAATGAAGGA GCAGTGCAAG TTGGTCCAGG AGTATCTGAA GGCTAGGCTC
0121 GATGGGAGTG ATGGAANGCG ATGCAGAATA TAATAGTGAT TCCTATTCAG ATTTTGAATC
0181 CGAGTCGGAT TCCGATTCCG ATTCCGATTT CGAGGAGGAT TCCCTTACTG ATTCCGATGA
0241 GCAAACAGAN GAGAGCAGNG ATGAGTCCGA ATCGGAACAC AGTGAAGTCG AGGAGCGTAC
0301 CAAACCATCA GATACTCACA AGACTACCAA CGGAGGTCTC TGCGAAAAAC CAATCTCCAA
0361 GGTCGAGCCT GAACAATCNT CGGCTCGTGG CCTTTGTGGC TCCTCTCAAG TCCCCTGCCC
0421 CCCNCATCCA CCGNCGACAT GACTATGGCT GGTGGCGTTA TAgCTCCTCA TAGTCGCAGT
0481 AGTGCCTT |
in silico PCR Fragment |
0001 GATTTAAAAC CCGCGTCCTT CGAAGACTTG GCCAATCAGG TGTTCGAAAA GTCGAAACAG
0061 ATGAGTATGT CAATGAAGGA GCAGTGCAAG TTGGTCCAGG AGTATTTGAA AGCTAGGCTC
0121 GATGGGAGTG ATGGAA-GCG ATGCAGAATA TAATAGTGAT TCCTATTCAG ATTTTGAATC
0181 CGAGTCGGAT TCCGATTCCG ATTCCGATTT CGAGGAGGAT TCCCTTACTG ATTCCGATGA
0241 GCAAACAGAG GAGAGCAGTG ATGAGTCCGA ATCGGAACAC AGTGAAGTCG AGGAGCGTAC
0301 CAAACCATCA GATACTCACA AGACTACCAA CGGAGGTCTC TGCGAAAAAC CAATCTCCAA
0361 GGTCGAGCCT GAACAATC-T CGGCTCGTGG CCTTTGTGGC TCCTCTCAAG TCCCCTGCCC
0421 CCCGCATCCA CCGTCGAC-T GACTATGGCT GGTGGCGTTA TAGCTCCTCA TAGTCGCAGT
0481 AGTGCCTT |
Assemble Data |
4375R-1.IR_full 1 ATTTAAAACCCGCGTCCTTCGAAGACTTGGCCAATCAGGTGTTCGAAAAGTCGAAACAG 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4375R-1.in silico 1 ATTTAAAACCCGCGTCCTTCGAAGACTTGGCCAATCAGGTGTTCGAAAAGTCGAAACAG 59
4375R-1.IR_full 61 ATGAGTATGTCAATGAAGGAGCAGTGCAAGTTGGTCCAGGAGTATCTGAAGGCTAGGCTC 119
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
4375R-1.in silico 61 ATGAGTATGTCAATGAAGGAGCAGTGCAAGTTGGTCCAGGAGTATTTGAAAGCTAGGCTC 119
4375R-1.IR_full 121 GATGGGAGTGATGGAANGCGATGCAGAATATAATAGTGATTCCTATTCAGATTTTGAATC 179
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4375R-1.in silico 121 GATGGGAGTGATGGAA-GCGATGCAGAATATAATAGTGATTCCTATTCAGATTTTGAATC 179
4375R-1.IR_full 181 CGAGTCGGATTCCGATTCCGATTCCGATTTCGAGGAGGATTCCCTTACTGATTCCGATGA 239
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4375R-1.in silico 181 CGAGTCGGATTCCGATTCCGATTCCGATTTCGAGGAGGATTCCCTTACTGATTCCGATGA 239
4375R-1.IR_full 241 GCAAACAGANGAGAGCAGNGATGAGTCCGAATCGGAACACAGTGAAGTCGAGGAGCGTAC 299
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4375R-1.in silico 241 GCAAACAGAGGAGAGCAGTGATGAGTCCGAATCGGAACACAGTGAAGTCGAGGAGCGTAC 299
4375R-1.IR_full 301 CAAACCATCAGATACTCACAAGACTACCAACGGAGGTCTCTGCGAAAAACCAATCTCCAA 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4375R-1.in silico 301 CAAACCATCAGATACTCACAAGACTACCAACGGAGGTCTCTGCGAAAAACCAATCTCCAA 359
4375R-1.IR_full 361 GGTCGAGCCTGAACAATCNTCGGCTCGTGGCCTTTGTGGCTCCTCTCAAGTCCCCTGCCC 419
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
4375R-1.in silico 361 GGTCGAGCCTGAACAATC-TCGGCTCGTGGCCTTTGTGGCTCCTCTCAAGTCCCCTGCCC 419
4375R-1.IR_full 421 CCCNCATCCACCGNCGACATGACTATGGCTGGTGGCGTTATAGCTCCTCATAGTCGCAGT 479
||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
4375R-1.in silico 421 CCCGCATCCACCGTCGAC-TGACTATGGCTGGTGGCGTTATAGCTCCTCATAGTCGCAGT 479
4375R-1.IR_full 481 AGTGCCTT 487
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4375R-1.in silico 481 AGTGCCTT 487
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
467 |
6 |
14 |
35 |
NM_164402.1 |
CG4375-RA (CG4375), mRNA |
0.85 |
4 |
17 |
17 |
18 |
NM_169432.2 |
CG31116-RA, transcript variant A (CG31116), mRNA |
0.85 |
4 |
17 |
17 |
18 |
NM_169431.2 |
CG31116-RC, transcript variant C (CG31116), mRNA |
0.85 |
4 |
15 |
57 |
62 |
NM_167339.1 |
CG32647-RB, transcript variant B (CG32647), mRNA |
0.85 |
4 |
15 |
57 |
62 |
NM_167338.1 |
CG32647-RA, transcript variant A (CG32647), mRNA |
0.64 |
3 |
18 |
35 |
43 |
NM_137751.3 |
CG10082-RB, transcript variant B (CG10082), mRNA |
0.64 |
3 |
13 |
18 |
22 |
NM_001043290.1 |
CG34100-RB, transcript variant B (mld), mRNA |
0.64 |
3 |
7 |
16 |
20 |
NM_132058.2 |
CG5966-RA (CG5966), mRNA |
0.42 |
2 |
3 |
5 |
8 |
NM_135796.2 |
CG9377-RA (CG9377), mRNA |
0.42 |
2 |
3 |
2 |
19 |
NM_168352.1 |
CG32048-RA, transcript variant A (CG32048), mRNA |
0.21 |
1 |
3 |
13 |
16 |
NM_132122.2 |
CG3126-RA, transcript variant A (C3G), mRNA |
0.21 |
1 |
3 |
13 |
15 |
NM_176694.1 |
CG3126-RB, transcript variant B (C3G), mRNA |
0 |
0 |
13 |
20 |
31 |
NM_206654.1 |
CG18009-RA, transcript variant A (Trf2), mRNA |
0 |
0 |
13 |
20 |
31 |
NM_078529.3 |
CG18009-RD, transcript variant D (Trf2), mRNA |
0 |
0 |
7 |
15 |
31 |
NM_168505.1 |
CG10601-RB, transcript variant B (mirr), mRNA |
0 |
0 |
7 |
15 |
31 |
NM_079323.2 |
CG10601-RA, transcript variant A (mirr), mRNA |
0 |
0 |
7 |
13 |
27 |
NM_140315.3 |
CG4357-RA, transcript variant A (Ncc69), mRNA |
0 |
0 |
5 |
6 |
14 |
NM_135175.2 |
CG9505-RA (CG9505), mRNA |
0 |
0 |
5 |
6 |
10 |
NM_130542.2 |
CG11403-RA (CG11403), mRNA |
0 |
0 |
4 |
16 |
17 |
NM_166865.2 |
CG32815-RA (CG32815), mRNA |
0 |
0 |
4 |
12 |
19 |
NM_167598.1 |
CG32552-RA (CG32552), mRNA |
0 |
0 |
4 |
7 |
17 |
NM_170659.1 |
CG7835-RA (CG7835), mRNA |
0 |
0 |
3 |
10 |
21 |
NM_141823.2 |
CG5308-RA, transcript variant A (dpr5), mRNA |
0 |
0 |
3 |
9 |
17 |
NM_135302.3 |
CG7191-RA (CG7191), mRNA |
0 |
0 |
3 |
2 |
5 |
NM_080081.2 |
CG11450-RA (net), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_139893.2 |
CG7457-RA (CG7457), mRNA |
0 |
0 |
2 |
17 |
23 |
NM_136984.3 |
CG13322-RA, transcript variant A (CG13322), mRNA |
0 |
0 |
2 |
17 |
23 |
NM_165962.2 |
CG13322-RB, transcript variant B (CG13322), mRNA |
0 |
0 |
2 |
17 |
23 |
NM_165963.1 |
CG13322-RC, transcript variant C (CG13322), mRNA |
0 |
0 |
2 |
11 |
14 |
NM_143392.2 |
CG14521-RA (CG14521), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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