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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 4259R-1 
 Symbol CG4259  Full Name CG4259 
 CG No CG4259  Old CG No CG4259 
 Synonyms SPH173, CG4259 
 Accession No (Link to NCBI) NM_134801.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGACATTTCCCTGGGTGGTTT 
 Primer Seq. 3'
aatctagaggtaccGCCTTCCAGACCTTTCCCACA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CGACATTTCC CTGGGTGGTT TCTGTGCTCG ACCAGAGGGA TTGGCTGTTT CGCTATATAG 
0061 GAGTGGGATC TCTGATTAAT CCAAATGTGG TCCTTACTGC CGCTCATATT CTGAATGGAA 
0121 CAACCAAGTA TGATCTGGTG GTGCGAGCTG GCGAATGGGA TACCTCGACT ACGGCTGACC 
0181 AGCAGCACGT GGATCTCGAG GTGCTGAATA TAGTCTCCCA TGAACAGTTC AACAGATTCA 
0241 ATGCCGAAAA CAACATGGCG TTACTCATTC TGGTATCCGC ATTTGAGATG ACAGCCAACA 
0301 TTAATTTAAT CCCATTGTAC CTACAAGAAG CTGGTATTCA AAAAGGATCC TGCTTCTTCA 
0361 ACGGCTGGGG AAAAGTATAT TTGAACTCGA CGGACTACCC CACCGTTCTC AAGACGGTCC 
0421 AGGTCGATCT TTTGAGCATG GGTATGTGTA GCTCTCGAAA GCTGCCCATC CAGCAAATCT 
0481 GTGGGAAAGG TCTGGAANGC  
 in silico PCR Fragment
0001 CGACATTTCC CTGGGTGGTT TCTGTGCTCG ACCAGAGGGA TTGGCTGTTT CGCTATATAG 
0061 GAGTGGGATC TCTGATTAAT CCAAATGTGG TCCTTACTGC CGCTCATATT CTGAATGGAA 
0121 CAACCAAGTA TGATCTGGTG GTGCGAGCTG GCGAATGGGA TACCTCGACT ACGGCTGACC 
0181 AGCAGCACGT GGATCTCGAG GTGCTGAATA TAGTCTCCCA TGAACAGTTC AACAGATTCA 
0241 ATGCCGAAAA CAACATGGCG TTACTCATTC TGGTATCCGC ATTTGAGATG ACAGCCAACA 
0301 TTAATTTAAT CCCATTGTAC CTACAAGAAG CTGGTATTCA AAAAGGATCC TGCTTCTTCA 
0361 ACGGCTGGGG AAAAGTATAT TTGAACTCGA CGGACTACCC CACCGTTCTC AAGACGGTCC 
0421 AGGTCGATCT TTTGAGCATG GGTATGTGTA GCTCTCGAAA GCTGCCCATC CAGCAAATCT 
0481 GTGGGAAAGG TCTGGAAGGC  
 Assemble Data

4259R-1.IR_full       1   CGACATTTCCCTGGGTGGTTTCTGTGCTCGACCAGAGGGATTGGCTGTTTCGCTATATAG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4259R-1.in silico     1   CGACATTTCCCTGGGTGGTTTCTGTGCTCGACCAGAGGGATTGGCTGTTTCGCTATATAG 60


4259R-1.IR_full       61  GAGTGGGATCTCTGATTAATCCAAATGTGGTCCTTACTGCCGCTCATATTCTGAATGGAA 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4259R-1.in silico     61  GAGTGGGATCTCTGATTAATCCAAATGTGGTCCTTACTGCCGCTCATATTCTGAATGGAA 120


4259R-1.IR_full       121 CAACCAAGTATGATCTGGTGGTGCGAGCTGGCGAATGGGATACCTCGACTACGGCTGACC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4259R-1.in silico     121 CAACCAAGTATGATCTGGTGGTGCGAGCTGGCGAATGGGATACCTCGACTACGGCTGACC 180


4259R-1.IR_full       181 AGCAGCACGTGGATCTCGAGGTGCTGAATATAGTCTCCCATGAACAGTTCAACAGATTCA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4259R-1.in silico     181 AGCAGCACGTGGATCTCGAGGTGCTGAATATAGTCTCCCATGAACAGTTCAACAGATTCA 240


4259R-1.IR_full       241 ATGCCGAAAACAACATGGCGTTACTCATTCTGGTATCCGCATTTGAGATGACAGCCAACA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4259R-1.in silico     241 ATGCCGAAAACAACATGGCGTTACTCATTCTGGTATCCGCATTTGAGATGACAGCCAACA 300


4259R-1.IR_full       301 TTAATTTAATCCCATTGTACCTACAAGAAGCTGGTATTCAAAAAGGATCCTGCTTCTTCA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4259R-1.in silico     301 TTAATTTAATCCCATTGTACCTACAAGAAGCTGGTATTCAAAAAGGATCCTGCTTCTTCA 360


4259R-1.IR_full       361 ACGGCTGGGGAAAAGTATATTTGAACTCGACGGACTACCCCACCGTTCTCAAGACGGTCC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4259R-1.in silico     361 ACGGCTGGGGAAAAGTATATTTGAACTCGACGGACTACCCCACCGTTCTCAAGACGGTCC 420


4259R-1.IR_full       421 AGGTCGATCTTTTGAGCATGGGTATGTGTAGCTCTCGAAAGCTGCCCATCCAGCAAATCT 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
4259R-1.in silico     421 AGGTCGATCTTTTGAGCATGGGTATGTGTAGCTCTCGAAAGCTGCCCATCCAGCAAATCT 480


4259R-1.IR_full       481 GTGGGAAAGGTCTGGAANGC 500
                          ||||||||||||||||| ||
4259R-1.in silico     481 GTGGGAAAGGTCTGGAAGGC 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_134801.1  CG4259-RA (CG4259), mRNA 
0.41   NM_135919.1  CG18477-RA (CG18477), mRNA 
0.41   NM_165119.1  CG31780-RB (CG31780), mRNA 
0.2   NM_135530.2  CG5390-RA (CG5390), mRNA 
0   NM_135909.2  CG4161-RA (CG4161), mRNA 
0   NM_169856.1  CG31245-RA (CG31245), mRNA 
0   NM_142901.1  CG10182-RA (CG10182), mRNA 
0   NM_141283.2  CG12162-RA, transcript variant A (CG12162), mRNA 
0   NM_166992.2  CG2904-RA (ec), mRNA 
0   NM_167794.1  CG1210-RE, transcript variant E (Pk61C), mRNA 
0   NM_167793.1  CG1210-RB, transcript variant B (Pk61C), mRNA 
0   NM_167795.1  CG1210-RG, transcript variant G (Pk61C), mRNA 
0   NM_167789.1  CG1210-RC, transcript variant C (Pk61C), mRNA 
0   NM_167791.1  CG1210-RF, transcript variant F (Pk61C), mRNA 
0   NM_167790.1  CG1210-RD, transcript variant D (Pk61C), mRNA 
0   NM_167792.1  CG1210-RH, transcript variant H (Pk61C), mRNA 
0   NM_080382.2  CG1210-RA, transcript variant A (Pk61C), mRNA 
0   11  NM_134878.1  CG3117-RA (CG3117), mRNA 
0   NM_135336.2  CG7466-RA (CG7466), mRNA 
0   NM_137162.1  CG10253-RA (CG10253), mRNA 
0   10  NM_139599.1  CG14990-RA (CG14990), mRNA 
0   NM_170252.2  CG8318-RC, transcript variant C (Nf1), mRNA 
0   NM_170253.2  CG8318-RB, transcript variant B (Nf1), mRNA 
0   NM_001014668.1  CG8318-RD, transcript variant D (Nf1), mRNA 
0   NM_167039.1  CG32762-RA (CG32762), mRNA 
0   NM_001015212.1  CG40160-PA.3 (CG40160), mRNA 
0   NM_001015214.1  CG40160-PC.3 (CG40160), mRNA 
0   NM_001015213.1  CG40160-PB.3 (CG40160), mRNA 
0   NM_001043113.1  CG33484-RC, transcript variant C (zormin), mRNA 
0   NM_206240.1  CG33484-RA, transcript variant A (zormin), mRNA 

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