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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 3927R-2 
 Symbol CG3927  Full Name CG3927 
 CG No CG3927  Old CG No CG3927 
 Synonyms cg3927, BcDNA:AT29209, CG3927 
 Accession No (Link to NCBI) NM_137837.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgAAGACCAACCTACCTACCAGC 
 Primer Seq. 3'
aatctagaggtaccGTACTTACGGATCTCGGCCAG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 AAGACCAACC TACCTACCAG CCGCGACTGA ANCGAGGTGG CCCAAAAGTT TCTCGCCGAT 
0061 TTGGACGCGG AGcNCAAGCG ATNTGTCCGC GGAGTTTCCA CTTTNGCGCA CTGCTAATCG 
0121 ACGAATCTGT GGACCGTGTC TACTCCACTG GTCNGCATTC CCGGCAAGGA GCCCTTCGCA 
0181 GACGTGTACC AGCAGAAGCC GATGAAGATT ATCCAAAAGG TCTTCGTGCC TGTTAATAAG 
0241 TTTCCCAAGT TCAACTTCAC TGGCAAGATC CTNGNGcNCA AGGGCAACTC GCTgNGTCGC 
0301 CTTCAGGAGG AGACCCACTG CAAGATTGTC ATCAAGGGTC GCAACTCGAT GCGCGATCGT 
0361 AACAAAGAGG AGNAGCTGCG CAGCTCAGGC GACCCGAGAT ATGCCCATCT TCACAAGGAT 
0421 CTCTTTTTGG AGGTCAGCGC GGTGGccCCN CCGGCGGAgt NCTATGCACG GATAGCCTAC 
0481 GcNCTGGCCG AGATNCGTAA GTAC 
 in silico PCR Fragment
0001 AAGACCAACC TACCTACCAG CCGCGACTGA A-CGAGGTGG CCCAAAAGTT TCTCGCCGAT 
0061 TTGGACGCGG AGCGCAAGCG AT-TGTCCGC GGAGTTTCCA CTTT-GCGCA CTGCTAATCG 
0121 ACGAATCTGT GGACCGTGTC TACTCCACTG GTC-GCATTC CCGGCAAGGA GCCCTTCGCA 
0181 GACGTGTACC AGCAGAAGCC GATGAAGATT ATCCAAAAGG TCTTCGTGCC TGTTAATAAG 
0241 TTTCCCAAGT TCAACTTCAC TGGCAAGATC CTAGGGCCCA AGGGCAACTC GCTGCGTCGC 
0301 CTTCAGGAGG AGACCCACTG CAAGATTGTC ATCAAGGGTC GCAACTCGAT GCGCGATCGT 
0361 AACAAAGAGG AGGAGCTGCG CAGCTCAGGC GACCCGAGAT ATGCCCATCT TCACAAGGAT 
0421 CTCTTTTTGG AGGTCAGCGC GGTGGCCCCT CCGGCGGAGT GCTATGCACG GATAGCCTAC 
0481 GCCCTGGCCG AGATCCGTAA GTAC 
 Assemble Data

3927R-2.IR_full       1   AAGACCAACCTACCTACCAGCCGCGACTGAANCGAGGTGGCCCAAAAGTTTCTCGCCGAT 60
                          ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
3927R-2.in silico     1   AAGACCAACCTACCTACCAGCCGCGACTGAA-CGAGGTGGCCCAAAAGTTTCTCGCCGAT 60


3927R-2.IR_full       61  TTGGACGCGGAGCNCAAGCGATNTGTCCGCGGAGTTTCCACTTTNGCGCACTGCTAATCG 120
                          ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||
3927R-2.in silico     61  TTGGACGCGGAGCGCAAGCGAT-TGTCCGCGGAGTTTCCACTTT-GCGCACTGCTAATCG 120


3927R-2.IR_full       121 ACGAATCTGTGGACCGTGTCTACTCCACTGGTCNGCATTCCCGGCAAGGAGCCCTTCGCA 180
                          ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
3927R-2.in silico     121 ACGAATCTGTGGACCGTGTCTACTCCACTGGTC-GCATTCCCGGCAAGGAGCCCTTCGCA 180


3927R-2.IR_full       181 GACGTGTACCAGCAGAAGCCGATGAAGATTATCCAAAAGGTCTTCGTGCCTGTTAATAAG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3927R-2.in silico     181 GACGTGTACCAGCAGAAGCCGATGAAGATTATCCAAAAGGTCTTCGTGCCTGTTAATAAG 240


3927R-2.IR_full       241 TTTCCCAAGTTCAACTTCACTGGCAAGATCCTNGNGCNCAAGGGCAACTCGCTGNGTCGC 300
                          |||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||
3927R-2.in silico     241 TTTCCCAAGTTCAACTTCACTGGCAAGATCCTAGGGCCCAAGGGCAACTCGCTGCGTCGC 300


3927R-2.IR_full       301 CTTCAGGAGGAGACCCACTGCAAGATTGTCATCAAGGGTCGCAACTCGATGCGCGATCGT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3927R-2.in silico     301 CTTCAGGAGGAGACCCACTGCAAGATTGTCATCAAGGGTCGCAACTCGATGCGCGATCGT 360


3927R-2.IR_full       361 AACAAAGAGGAGNAGCTGCGCAGCTCAGGCGACCCGAGATATGCCCATCTTCACAAGGAT 420
                          |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
3927R-2.in silico     361 AACAAAGAGGAGGAGCTGCGCAGCTCAGGCGACCCGAGATATGCCCATCTTCACAAGGAT 420


3927R-2.IR_full       421 CTCTTTTTGGAGGTCAGCGCGGTGGCCCCNCCGGCGGAGTNCTATGCACGGATAGCCTAC 480
                          ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
3927R-2.in silico     421 CTCTTTTTGGAGGTCAGCGCGGTGGCCCCTCCGGCGGAGTGCTATGCACGGATAGCCTAC 480


3927R-2.IR_full       481 GCNCTGGCCGAGATNCGTAAGTAC 504
                          || ||||||||||| |||||||||
3927R-2.in silico     481 GCCCTGGCCGAGATCCGTAAGTAC 504

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_137837.1  CG3927-RA (CG3927), mRNA 
45.85   221  151  60  32  NM_137838.1  CG3875-RA (CG3875), mRNA 
13.07   63  154  111  73  NM_137766.1  CG4021-RA (CG4021), mRNA 
12.44   60  187  134  51  NM_057958.3  CG3584-RA (qkr58E-3), mRNA 
8.92   43  53  74  45  NR_002695.1  CR9337, mRNA 
6.63   32  58  63  41  NR_001677.1  CR33318, mRNA 
3.52   17  98  43  42  NM_206018.1  CG33317-RA (CG33317), mRNA 
0.2   10  31  36  NM_079048.2  CG4816-RB, transcript variant B (qkr54B), mRNA 
0.2   10  31  36  NM_166231.1  CG4816-RC, transcript variant C (qkr54B), mRNA 
0.2   10  31  36  NM_166230.1  CG4816-RA, transcript variant A (qkr54B), mRNA 
0   20  25  33  NM_079086.2  CG5821-RA (qkr58E-2), mRNA 
0   18  21  32  NM_079085.3  CG3613-RA (qkr58E-1), mRNA 
0   NM_132388.2  CG2909-RA (CG2909), mRNA 
0   16  14  NM_137829.1  CG10384-RA (CG10384), mRNA 
0   NM_132189.1  CG1422-RA (p115), mRNA 
0   NM_144280.1  CG15352-RA (CG15352), mRNA 
0   NM_136515.2  CG8709-RA (CG8709), mRNA 
0   NM_001014557.1  CG33545-RA (nab), mRNA 
0   NM_166461.1  CG30287-RA (CG30287), mRNA 
0   NM_168468.1  CG32091-RB (CG32091), mRNA 
0   NM_137882.1  CG13531-RB (CG13531), mRNA 
0   NM_168343.1  CG3743-RB, transcript variant B (MTF-1), mRNA 
0   NM_140054.2  CG3743-RA, transcript variant A (MTF-1), mRNA 
0   NM_142745.2  CG6028-RA, transcript variant A (CG6028), mRNA 
0   NM_169989.1  CG6028-RB, transcript variant B (CG6028), mRNA 
0   10  NM_078653.1  CG18572-RA, transcript variant A (r), mRNA 
0   NM_206765.1  CG18572-RB, transcript variant B (r), mRNA 
0   NM_001043302.1  CG11958-RD, transcript variant D (Cnx99A), mRNA 
0   NM_001043301.1  CG11958-RC, transcript variant C (Cnx99A), mRNA 
0   NM_057809.4  CG11958-RB, transcript variant B (Cnx99A), mRNA 

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