Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
3927R-1 |
Symbol |
CG3927 |
Full Name |
CG3927 |
CG No |
CG3927 |
Old CG No |
CG3927 |
Synonyms |
cg3927, BcDNA:AT29209, CG3927 |
Accession No (Link to NCBI) |
NM_137837.1 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgAAGACCAACCTACCTACCAGC |
Primer Seq. 3' |
aatctagaggtaccGTACTTACGGATCTCGGCCAG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 AAGACCAACC TACCTACCAG CCGCGACTGA ANCGAGGTGG CCCAAAAGTT TCTCGCCGAT
0061 TTGGACGCGG AGcNCAAGCG ATNTGTCCGC GGAGTTTCCA CTTTNGCGCA CTGCTAATCG
0121 ACGAATCTGT GGACCGTGTC TACTCCACTG GTCNGCATTC CCGGCAAGGA GCCCTTCGCA
0181 GACGTGTACC AGCAGAAGCC GATGAAGATT ATCCAAAAGG TCTTCGTGCC TGTTAATAAG
0241 TTTCCCAAGT TCAACTTCAC TGGCAAGATC CTNGNGcNCA AGGGCAACTC GCTgNGTCGC
0301 CTTCAGGAGG AGACCCACTG CAAGATTGTC ATCAAGGGTC GCAACTCGAT GCGCGATCGT
0361 AACAAAGAGG AGNAGCTGCG CAGCTCAGGC GACCCGAGAT ATGCCCATCT TCACAAGGAT
0421 CTCTTTTTGG AGGTCAGCGC GGTGGccCCN CCGGCGGAgt NCTATGCACG GATAGCCTAC
0481 GcNCTGGCCG AGATNCGTAA GTAC |
in silico PCR Fragment |
0001 AAGACCAACC TACCTACCAG CCGCGACTGA A-CGAGGTGG CCCAAAAGTT TCTCGCCGAT
0061 TTGGACGCGG AGCGCAAGCG AT-TGTCCGC GGAGTTTCCA CTTT-GCGCA CTGCTAATCG
0121 ACGAATCTGT GGACCGTGTC TACTCCACTG GTC-GCATTC CCGGCAAGGA GCCCTTCGCA
0181 GACGTGTACC AGCAGAAGCC GATGAAGATT ATCCAAAAGG TCTTCGTGCC TGTTAATAAG
0241 TTTCCCAAGT TCAACTTCAC TGGCAAGATC CTAGGGCCCA AGGGCAACTC GCTGCGTCGC
0301 CTTCAGGAGG AGACCCACTG CAAGATTGTC ATCAAGGGTC GCAACTCGAT GCGCGATCGT
0361 AACAAAGAGG AGGAGCTGCG CAGCTCAGGC GACCCGAGAT ATGCCCATCT TCACAAGGAT
0421 CTCTTTTTGG AGGTCAGCGC GGTGGCCCCT CCGGCGGAGT GCTATGCACG GATAGCCTAC
0481 GCCCTGGCCG AGATCCGTAA GTAC |
Assemble Data |
3927R-1.IR_full 1 AAGACCAACCTACCTACCAGCCGCGACTGAANCGAGGTGGCCCAAAAGTTTCTCGCCGAT 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
3927R-1.in silico 1 AAGACCAACCTACCTACCAGCCGCGACTGAA-CGAGGTGGCCCAAAAGTTTCTCGCCGAT 60
3927R-1.IR_full 61 TTGGACGCGGAGCNCAAGCGATNTGTCCGCGGAGTTTCCACTTTNGCGCACTGCTAATCG 120
||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||
3927R-1.in silico 61 TTGGACGCGGAGCGCAAGCGAT-TGTCCGCGGAGTTTCCACTTT-GCGCACTGCTAATCG 120
3927R-1.IR_full 121 ACGAATCTGTGGACCGTGTCTACTCCACTGGTCNGCATTCCCGGCAAGGAGCCCTTCGCA 180
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3927R-1.in silico 121 ACGAATCTGTGGACCGTGTCTACTCCACTGGTC-GCATTCCCGGCAAGGAGCCCTTCGCA 180
3927R-1.IR_full 181 GACGTGTACCAGCAGAAGCCGATGAAGATTATCCAAAAGGTCTTCGTGCCTGTTAATAAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3927R-1.in silico 181 GACGTGTACCAGCAGAAGCCGATGAAGATTATCCAAAAGGTCTTCGTGCCTGTTAATAAG 240
3927R-1.IR_full 241 TTTCCCAAGTTCAACTTCACTGGCAAGATCCTNGNGCNCAAGGGCAACTCGCTGNGTCGC 300
|||||||||||||||||||||||||||||||| | || |||||||||||||||| |||||
3927R-1.in silico 241 TTTCCCAAGTTCAACTTCACTGGCAAGATCCTAGGGCCCAAGGGCAACTCGCTGCGTCGC 300
3927R-1.IR_full 301 CTTCAGGAGGAGACCCACTGCAAGATTGTCATCAAGGGTCGCAACTCGATGCGCGATCGT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
3927R-1.in silico 301 CTTCAGGAGGAGACCCACTGCAAGATTGTCATCAAGGGTCGCAACTCGATGCGCGATCGT 360
3927R-1.IR_full 361 AACAAAGAGGAGNAGCTGCGCAGCTCAGGCGACCCGAGATATGCCCATCTTCACAAGGAT 420
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3927R-1.in silico 361 AACAAAGAGGAGGAGCTGCGCAGCTCAGGCGACCCGAGATATGCCCATCTTCACAAGGAT 420
3927R-1.IR_full 421 CTCTTTTTGGAGGTCAGCGCGGTGGCCCCNCCGGCGGAGTNCTATGCACGGATAGCCTAC 480
||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||
3927R-1.in silico 421 CTCTTTTTGGAGGTCAGCGCGGTGGCCCCTCCGGCGGAGTGCTATGCACGGATAGCCTAC 480
3927R-1.IR_full 481 GCNCTGGCCGAGATNCGTAAGTAC 504
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3927R-1.in silico 481 GCCCTGGCCGAGATCCGTAAGTAC 504
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_137837.1 |
CG3927-RA (CG3927), mRNA |
45.85 |
221 |
151 |
60 |
32 |
NM_137838.1 |
CG3875-RA (CG3875), mRNA |
13.07 |
63 |
154 |
111 |
73 |
NM_137766.1 |
CG4021-RA (CG4021), mRNA |
12.44 |
60 |
187 |
134 |
51 |
NM_057958.3 |
CG3584-RA (qkr58E-3), mRNA |
8.92 |
43 |
53 |
74 |
45 |
NR_002695.1 |
CR9337, mRNA |
6.63 |
32 |
58 |
63 |
41 |
NR_001677.1 |
CR33318, mRNA |
3.52 |
17 |
98 |
43 |
42 |
NM_206018.1 |
CG33317-RA (CG33317), mRNA |
0.2 |
1 |
10 |
31 |
36 |
NM_079048.2 |
CG4816-RB, transcript variant B (qkr54B), mRNA |
0.2 |
1 |
10 |
31 |
36 |
NM_166231.1 |
CG4816-RC, transcript variant C (qkr54B), mRNA |
0.2 |
1 |
10 |
31 |
36 |
NM_166230.1 |
CG4816-RA, transcript variant A (qkr54B), mRNA |
0 |
0 |
20 |
25 |
33 |
NM_079086.2 |
CG5821-RA (qkr58E-2), mRNA |
0 |
0 |
18 |
21 |
32 |
NM_079085.3 |
CG3613-RA (qkr58E-1), mRNA |
0 |
0 |
4 |
2 |
2 |
NM_132388.2 |
CG2909-RA (CG2909), mRNA |
0 |
0 |
3 |
16 |
14 |
NM_137829.1 |
CG10384-RA (CG10384), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_132189.1 |
CG1422-RA (p115), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_144280.1 |
CG15352-RA (CG15352), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_136515.2 |
CG8709-RA (CG8709), mRNA |
0 |
0 |
2 |
2 |
1 |
NM_001014557.1 |
CG33545-RA (nab), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_166461.1 |
CG30287-RA (CG30287), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_168468.1 |
CG32091-RB (CG32091), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_137882.1 |
CG13531-RB (CG13531), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_168343.1 |
CG3743-RB, transcript variant B (MTF-1), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_140054.2 |
CG3743-RA, transcript variant A (MTF-1), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_142745.2 |
CG6028-RA, transcript variant A (CG6028), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_169989.1 |
CG6028-RB, transcript variant B (CG6028), mRNA |
0 |
0 |
1 |
2 |
10 |
NM_078653.1 |
CG18572-RA, transcript variant A (r), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_206765.1 |
CG18572-RB, transcript variant B (r), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_001043302.1 |
CG11958-RD, transcript variant D (Cnx99A), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_001043301.1 |
CG11958-RC, transcript variant C (Cnx99A), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_057809.4 |
CG11958-RB, transcript variant B (Cnx99A), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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+ |
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DB |
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++ |
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DC |
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++ |
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DM |
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+ |
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VM |
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VB |
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