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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 32110R-1 
 Symbol CG32110  Full Name CG32110 
 CG No CG32110  Old CG No CG32110 
 Synonyms unnamed, anon-AE003540.1, CG32110 
 Accession No (Link to NCBI) NM_168520.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees semi-lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGGATTACCCTATGGCCAAGAC 
 Primer Seq. 3'
aatctagaggtaccTCAGCGGAATCAATTCGCTGC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GGATTACCCT ATGGCCAAGA CAATGCCAGT TCTAAAGCAG CCCGAGAATT TCCAGGAACA 
0061 AGAGGAGGAC GTTGTAATGG CCGTGCAAGA AAAACTCAAA TTTTTCCGCA AACTAACCAG 
0121 CAATGGTCCC GCAGTCCCGA CACCGCTTAA AGTCGTTGAA AAGGAGGACA TAGGACATAA 
0181 GGAGATACCA AAGGTGGTCA AGAAAGTTGA CCGTAAAACG AAACTGCTGC AAGCCATACC 
0241 AGCGGTCTTC AAACATAGCC ACAATCGACG CTTTCGAAGA TCCTTATTTT TAAGGTCCAA 
0301 CTATATCGAG CAATTTCGGC GTTGGACGGA TCAAAAAAAC AAGTTAAATA GAAAGCGCTT 
0361 GAATGAAGCA CATCAGTTGT GTTTAAAAGC CAAACACGAG CGAATTGCCT GCGAAATCGA 
0421 TAGATACAAG AAGCTGATCC TTAAGCAGTC CGTCCATGTG ATCGAGGACA TAAGAATCAG 
0481 CAGCGAATTG ATTCCGCTGA  
 in silico PCR Fragment
0001 GGATTACCCT ATGGCCAAGA CAATGCCAGT TCTAAAGCAG CCCGAGAATT TCCAGGAACA 
0061 AGAGGAGGAC GTTGTAATGG CCGTGCAAGA AAAACTCAAA TTTTTCCGCA AACTAACCAG 
0121 CAATGGTCCC GCAGTCCCGA CACCGCTTAA AGTCGTTGAA AAGGAGGACA TAGGACATAA 
0181 GGAGATACCA AAGGTGGTCA AGAAAGTTGA CCGTAAAACG AAACTGCTGC AAGCCATACC 
0241 AGCGGTCTTC AAACATAGCC ACAATCGACG CTTTCGAAGA TCCTTATTTT TAAGGTCCAA 
0301 CTATATCGAG CAATTTCGGC GTTGGACGGA TCAAAAAAAC AAGTTAAATA GAAAGCGCTT 
0361 GAATGAAGCA CATCAGTTGT GTTTAAAAGC CAAACACGAG CGAATTGCCT GCGAAATCGA 
0421 TAGATACAAG AAGCTGATCC TTAAGCAGTC CGTCCATGTG ATCGAGGACA TAAGAATCAG 
0481 CAGCGAATTG ATTCCGCTGA  
 Assemble Data

32110R-1.IR_full       1   GGATTACCCTATGGCCAAGACAATGCCAGTTCTAAAGCAGCCCGAGAATTTCCAGGAACA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32110R-1.in silico     1   GGATTACCCTATGGCCAAGACAATGCCAGTTCTAAAGCAGCCCGAGAATTTCCAGGAACA 60


32110R-1.IR_full       61  AGAGGAGGACGTTGTAATGGCCGTGCAAGAAAAACTCAAATTTTTCCGCAAACTAACCAG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32110R-1.in silico     61  AGAGGAGGACGTTGTAATGGCCGTGCAAGAAAAACTCAAATTTTTCCGCAAACTAACCAG 120


32110R-1.IR_full       121 CAATGGTCCCGCAGTCCCGACACCGCTTAAAGTCGTTGAAAAGGAGGACATAGGACATAA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32110R-1.in silico     121 CAATGGTCCCGCAGTCCCGACACCGCTTAAAGTCGTTGAAAAGGAGGACATAGGACATAA 180


32110R-1.IR_full       181 GGAGATACCAAAGGTGGTCAAGAAAGTTGACCGTAAAACGAAACTGCTGCAAGCCATACC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32110R-1.in silico     181 GGAGATACCAAAGGTGGTCAAGAAAGTTGACCGTAAAACGAAACTGCTGCAAGCCATACC 240


32110R-1.IR_full       241 AGCGGTCTTCAAACATAGCCACAATCGACGCTTTCGAAGATCCTTATTTTTAAGGTCCAA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32110R-1.in silico     241 AGCGGTCTTCAAACATAGCCACAATCGACGCTTTCGAAGATCCTTATTTTTAAGGTCCAA 300


32110R-1.IR_full       301 CTATATCGAGCAATTTCGGCGTTGGACGGATCAAAAAAACAAGTTAAATAGAAAGCGCTT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32110R-1.in silico     301 CTATATCGAGCAATTTCGGCGTTGGACGGATCAAAAAAACAAGTTAAATAGAAAGCGCTT 360


32110R-1.IR_full       361 GAATGAAGCACATCAGTTGTGTTTAAAAGCCAAACACGAGCGAATTGCCTGCGAAATCGA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32110R-1.in silico     361 GAATGAAGCACATCAGTTGTGTTTAAAAGCCAAACACGAGCGAATTGCCTGCGAAATCGA 420


32110R-1.IR_full       421 TAGATACAAGAAGCTGATCCTTAAGCAGTCCGTCCATGTGATCGAGGACATAAGAATCAG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
32110R-1.in silico     421 TAGATACAAGAAGCTGATCCTTAAGCAGTCCGTCCATGTGATCGAGGACATAAGAATCAG 480


32110R-1.IR_full       481 CAGCGAATTGATTCCGCTGA 500
                           ||||||||||||||||||||
32110R-1.in silico     481 CAGCGAATTGATTCCGCTGA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_168520.1  CG32110-RA (CG32110), mRNA 
0   NM_132599.1  CG12717-RA (CG12717), mRNA 
0   NM_001042991.1  CG17082-RF, transcript variant F (CG17082), mRNA 
0   NM_001042989.1  CG17082-RA, transcript variant A (CG17082), mRNA 
0   NM_001042993.1  CG17082-RB, transcript variant B (CG17082), mRNA 
0   NM_001042990.1  CG17082-RC, transcript variant C (CG17082), mRNA 
0   NM_001042992.1  CG17082-RD, transcript variant D (CG17082), mRNA 
0   NM_001042994.1  CG17082-RE, transcript variant E (CG17082), mRNA 
0   NM_001038854.1  CG3845-RC, transcript variant C (l(2)01424), mRNA 
0   NM_165961.1  CG3845-RA, transcript variant A (l(2)01424), mRNA 
0   NM_136888.2  CG12367-RA (CG12367), mRNA 
0   NM_143770.2  CG3845-RB, transcript variant B (l(2)01424), mRNA 
0   NM_139369.1  CG7879-RA, transcript variant A (CG7879), mRNA 
0   NM_167896.1  CG7879-RB, transcript variant B (CG7879), mRNA 
0   NM_170050.1  CG31365-RA (CG31365), mRNA 
0   NM_001014742.1  CG6146-RC, transcript variant C (Top1), mRNA 
0   NM_078606.3  CG6146-RA, transcript variant A (Top1), mRNA 
0   NM_080161.1  CG3496-RA (vir), mRNA 
0   NM_137011.2  CG4688-RA (CG4688), mRNA 
0   NM_135090.2  CG7277-RA (CG7277), mRNA 
0   NM_001014591.1  CG8103-RB, transcript variant B (Mi-2), mRNA 
0   NM_140897.2  CG8103-RA, transcript variant A (Mi-2), mRNA 
0   NM_164842.1  CG9552-RA (rost), mRNA 
0   NM_137651.1  CG11180-RA (CG11180), mRNA 
0   NM_134747.2  CG5397-RA (CG5397), mRNA 
0   NM_136183.1  CG13970-RA (CG13970), mRNA 
0   NM_167080.1  CG32742-RA (l(1)G0148), mRNA 
0   NM_143554.1  CG2241-RA (CG2241), mRNA 
0   NM_141666.2  CG9492-RA (CG9492), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
DC
DM
VM
 
VB
 
Caspase-3 signal
N
 
DB
DC
DM
VM
 
VB
 
Dcompartment   Penetrance
   

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