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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
32110R-1 |
Symbol |
CG32110 |
Full Name |
CG32110 |
CG No |
CG32110 |
Old CG No |
CG32110 |
Synonyms |
unnamed, anon-AE003540.1, CG32110 |
Accession No (Link to NCBI) |
NM_168520.1 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
semi-lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGGATTACCCTATGGCCAAGAC |
Primer Seq. 3' |
aatctagaggtaccTCAGCGGAATCAATTCGCTGC |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GGATTACCCT ATGGCCAAGA CAATGCCAGT TCTAAAGCAG CCCGAGAATT TCCAGGAACA
0061 AGAGGAGGAC GTTGTAATGG CCGTGCAAGA AAAACTCAAA TTTTTCCGCA AACTAACCAG
0121 CAATGGTCCC GCAGTCCCGA CACCGCTTAA AGTCGTTGAA AAGGAGGACA TAGGACATAA
0181 GGAGATACCA AAGGTGGTCA AGAAAGTTGA CCGTAAAACG AAACTGCTGC AAGCCATACC
0241 AGCGGTCTTC AAACATAGCC ACAATCGACG CTTTCGAAGA TCCTTATTTT TAAGGTCCAA
0301 CTATATCGAG CAATTTCGGC GTTGGACGGA TCAAAAAAAC AAGTTAAATA GAAAGCGCTT
0361 GAATGAAGCA CATCAGTTGT GTTTAAAAGC CAAACACGAG CGAATTGCCT GCGAAATCGA
0421 TAGATACAAG AAGCTGATCC TTAAGCAGTC CGTCCATGTG ATCGAGGACA TAAGAATCAG
0481 CAGCGAATTG ATTCCGCTGA |
in silico PCR Fragment |
0001 GGATTACCCT ATGGCCAAGA CAATGCCAGT TCTAAAGCAG CCCGAGAATT TCCAGGAACA
0061 AGAGGAGGAC GTTGTAATGG CCGTGCAAGA AAAACTCAAA TTTTTCCGCA AACTAACCAG
0121 CAATGGTCCC GCAGTCCCGA CACCGCTTAA AGTCGTTGAA AAGGAGGACA TAGGACATAA
0181 GGAGATACCA AAGGTGGTCA AGAAAGTTGA CCGTAAAACG AAACTGCTGC AAGCCATACC
0241 AGCGGTCTTC AAACATAGCC ACAATCGACG CTTTCGAAGA TCCTTATTTT TAAGGTCCAA
0301 CTATATCGAG CAATTTCGGC GTTGGACGGA TCAAAAAAAC AAGTTAAATA GAAAGCGCTT
0361 GAATGAAGCA CATCAGTTGT GTTTAAAAGC CAAACACGAG CGAATTGCCT GCGAAATCGA
0421 TAGATACAAG AAGCTGATCC TTAAGCAGTC CGTCCATGTG ATCGAGGACA TAAGAATCAG
0481 CAGCGAATTG ATTCCGCTGA |
Assemble Data |
32110R-1.IR_full 1 GGATTACCCTATGGCCAAGACAATGCCAGTTCTAAAGCAGCCCGAGAATTTCCAGGAACA 60
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32110R-1.in silico 1 GGATTACCCTATGGCCAAGACAATGCCAGTTCTAAAGCAGCCCGAGAATTTCCAGGAACA 60
32110R-1.IR_full 61 AGAGGAGGACGTTGTAATGGCCGTGCAAGAAAAACTCAAATTTTTCCGCAAACTAACCAG 120
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32110R-1.in silico 61 AGAGGAGGACGTTGTAATGGCCGTGCAAGAAAAACTCAAATTTTTCCGCAAACTAACCAG 120
32110R-1.IR_full 121 CAATGGTCCCGCAGTCCCGACACCGCTTAAAGTCGTTGAAAAGGAGGACATAGGACATAA 180
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32110R-1.in silico 121 CAATGGTCCCGCAGTCCCGACACCGCTTAAAGTCGTTGAAAAGGAGGACATAGGACATAA 180
32110R-1.IR_full 181 GGAGATACCAAAGGTGGTCAAGAAAGTTGACCGTAAAACGAAACTGCTGCAAGCCATACC 240
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32110R-1.in silico 181 GGAGATACCAAAGGTGGTCAAGAAAGTTGACCGTAAAACGAAACTGCTGCAAGCCATACC 240
32110R-1.IR_full 241 AGCGGTCTTCAAACATAGCCACAATCGACGCTTTCGAAGATCCTTATTTTTAAGGTCCAA 300
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32110R-1.in silico 241 AGCGGTCTTCAAACATAGCCACAATCGACGCTTTCGAAGATCCTTATTTTTAAGGTCCAA 300
32110R-1.IR_full 301 CTATATCGAGCAATTTCGGCGTTGGACGGATCAAAAAAACAAGTTAAATAGAAAGCGCTT 360
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32110R-1.in silico 301 CTATATCGAGCAATTTCGGCGTTGGACGGATCAAAAAAACAAGTTAAATAGAAAGCGCTT 360
32110R-1.IR_full 361 GAATGAAGCACATCAGTTGTGTTTAAAAGCCAAACACGAGCGAATTGCCTGCGAAATCGA 420
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32110R-1.in silico 361 GAATGAAGCACATCAGTTGTGTTTAAAAGCCAAACACGAGCGAATTGCCTGCGAAATCGA 420
32110R-1.IR_full 421 TAGATACAAGAAGCTGATCCTTAAGCAGTCCGTCCATGTGATCGAGGACATAAGAATCAG 480
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32110R-1.in silico 421 TAGATACAAGAAGCTGATCCTTAAGCAGTCCGTCCATGTGATCGAGGACATAAGAATCAG 480
32110R-1.IR_full 481 CAGCGAATTGATTCCGCTGA 500
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32110R-1.in silico 481 CAGCGAATTGATTCCGCTGA 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
6 |
NM_168520.1 |
CG32110-RA (CG32110), mRNA |
0 |
0 |
3 |
3 |
2 |
NM_132599.1 |
CG12717-RA (CG12717), mRNA |
0 |
0 |
3 |
2 |
3 |
NM_001042991.1 |
CG17082-RF, transcript variant F (CG17082), mRNA |
0 |
0 |
3 |
2 |
3 |
NM_001042989.1 |
CG17082-RA, transcript variant A (CG17082), mRNA |
0 |
0 |
3 |
2 |
3 |
NM_001042993.1 |
CG17082-RB, transcript variant B (CG17082), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_001042990.1 |
CG17082-RC, transcript variant C (CG17082), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_001042992.1 |
CG17082-RD, transcript variant D (CG17082), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_001042994.1 |
CG17082-RE, transcript variant E (CG17082), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_001038854.1 |
CG3845-RC, transcript variant C (l(2)01424), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_165961.1 |
CG3845-RA, transcript variant A (l(2)01424), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_136888.2 |
CG12367-RA (CG12367), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_143770.2 |
CG3845-RB, transcript variant B (l(2)01424), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_139369.1 |
CG7879-RA, transcript variant A (CG7879), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_167896.1 |
CG7879-RB, transcript variant B (CG7879), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_170050.1 |
CG31365-RA (CG31365), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_001014742.1 |
CG6146-RC, transcript variant C (Top1), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_078606.3 |
CG6146-RA, transcript variant A (Top1), mRNA |
0 |
0 |
1 |
2 |
6 |
NM_080161.1 |
CG3496-RA (vir), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_137011.2 |
CG4688-RA (CG4688), mRNA |
0 |
0 |
0 |
8 |
4 |
NM_135090.2 |
CG7277-RA (CG7277), mRNA |
0 |
0 |
0 |
7 |
7 |
NM_001014591.1 |
CG8103-RB, transcript variant B (Mi-2), mRNA |
0 |
0 |
0 |
7 |
7 |
NM_140897.2 |
CG8103-RA, transcript variant A (Mi-2), mRNA |
0 |
0 |
0 |
6 |
3 |
NM_164842.1 |
CG9552-RA (rost), mRNA |
0 |
0 |
0 |
5 |
3 |
NM_137651.1 |
CG11180-RA (CG11180), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_134747.2 |
CG5397-RA (CG5397), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_136183.1 |
CG13970-RA (CG13970), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_167080.1 |
CG32742-RA (l(1)G0148), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_143554.1 |
CG2241-RA (CG2241), mRNA |
0 |
0 |
0 |
3 |
9 |
NM_141666.2 |
CG9492-RA (CG9492), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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Dcompartment |
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Penetrance |
+ |
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