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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 31904R-2 
 Symbol CG31904  Full Name CG31904 
 CG No CG31904  Old CG No CG31904 
 Synonyms anon-WO0149848.5, CG31904 
 Accession No (Link to NCBI) NM_164768.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Fan W, Lam SM, Xin J, Yang X, Liu Z, Liu Y, Wang Y, Shui G, Huang X.
Drosophila TRF2 and TAF9 regulate lipid droplet size and phospholipid fatty acid composition.
PLoS Genet (2017) 13(3) e1006664 [ PubMed ID = 28273089 ] [ RRC reference ]

Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]

Mummery-Widmer JL, Yamazaki M, Stoeger T, Novatchkova M, Bhalerao S, Chen D, Dietzl G, Dickson BJ, Knoblich JA.
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi.
Nature (2009) 458(7241) 987-92 [ PubMed ID = 19363474 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCAGAACTGCCCGGTGATTTTA 
 Primer Seq. 3'
aatctagaggtaccATATATGAGGGGCACTACAGC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CAGAACTGCC CGGTGATTTT ATCGGGGAGC CAGTGGAAAC GGAGTCCGGA GGCGGAATGG 
0061 GCGGTAGTCT GGCCCTAGCC GCCCGTCGTA TCCGAAGCCG CCAGGTGCAC AGCATGGCCG 
0121 TGCGAACGGG TAGTGCGTAT GATACCCTGG AGCGACCATA TCGGCATGAT AAATGTCGTG 
0181 GTCGTTGGGC CAAATCGGCG GACTTTTACT TTGCCAGCTG CACACATGCC TTCAGTTCGC 
0241 TGATCTTTTC GGAGCTCTCC ACCTTTGGAA TACTTCATGG CGGTTGGCTT TTGTTTATAA 
0301 TCGCCTACCT GATGGGAATG CTATTTTACT CGCTGCCAAT ATTTTTGATC CAAGCCTTTT 
0361 TGGGACAGTT TTCAAGTTCT GGAACCATAT CAGCATTTCG cGTGGCGCCA ATATTTAAAG 
0421 GCAttggCTA CGCCATTCTG CTCCTCAATC TGGGAACGCT CACCTATTAC AGTATAGCAG 
0481 CTGTAGTGCC CCTCATATAT  
 in silico PCR Fragment
0001 CAGAACTGCC CGGTGATTTT ATCGGGGAGC CAGTGGAAAC GGAGTCCGGA GGCGGAATGG 
0061 GCGGTAGTCT GGCCCTAGCC GCCCGTCGTA TCCGAAGCCG CCAGGTGCAC AGCATGGCCG 
0121 TGCGAACGGG TAGTGCGTAT GATACCCTGG AGCGACCATA TCGGCATGAT AAATGTCGTG 
0181 GTCGTTGGGC CAAATCGGCG GACTTTTACT TTGCCAGCTG CACACATGCC TTCAGTTCGC 
0241 TGATCTTTTC GGAGCTCTCC ACCTTTGGAA TACTTCATGG CGGTTGGCTT TTGTTTATAA 
0301 TCGCCTACCT GATGGGAATG CTATTTTACT CGCTGCCAAT ATTTTTGATC CAAGCCTTTT 
0361 TGGGACAGTT TTCAAGTTCT GGAACCATAT CAGCATTTCG CGTGGCGCCA ATATTTAAAG 
0421 GCATTGGCTA CGCCATTCTG CTCCTCAATC TGGGAACGCT CACCTATTAC AGTATAGCAG 
0481 CTGTAGTGCC CCTCATATAT  
 Assemble Data

31904R-2.IR_full       1   CAGAACTGCCCGGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31904R-2.in silico     1   CAGAACTGCCCGGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGG 60


31904R-2.IR_full       61  GCGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACAGCATGGCCG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31904R-2.in silico     61  GCGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACAGCATGGCCG 120


31904R-2.IR_full       121 TGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATATCGGCATGATAAATGTCGTG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31904R-2.in silico     121 TGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATATCGGCATGATAAATGTCGTG 180


31904R-2.IR_full       181 GTCGTTGGGCCAAATCGGCGGACTTTTACTTTGCCAGCTGCACACATGCCTTCAGTTCGC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31904R-2.in silico     181 GTCGTTGGGCCAAATCGGCGGACTTTTACTTTGCCAGCTGCACACATGCCTTCAGTTCGC 240


31904R-2.IR_full       241 TGATCTTTTCGGAGCTCTCCACCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31904R-2.in silico     241 TGATCTTTTCGGAGCTCTCCACCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAA 300


31904R-2.IR_full       301 TCGCCTACCTGATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31904R-2.in silico     301 TCGCCTACCTGATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTT 360


31904R-2.IR_full       361 TGGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAATATTTAAAG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31904R-2.in silico     361 TGGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAATATTTAAAG 420


31904R-2.IR_full       421 GCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTCACCTATTACAGTATAGCAG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31904R-2.in silico     421 GCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTCACCTATTACAGTATAGCAG 480


31904R-2.IR_full       481 CTGTAGTGCCCCTCATATAT 500
                           ||||||||||||||||||||
31904R-2.in silico     481 CTGTAGTGCCCCTCATATAT 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_164766.1  CG13796-RB, transcript variant B (CG13796), mRNA 
100   482  NM_135296.1  CG13796-RA, transcript variant A (CG13796), mRNA 
100   482  NM_164767.1  CG13796-RC, transcript variant C (CG13796), mRNA 
100   482  NM_164768.1  CG31904-RB, transcript variant B (CG31904), mRNA 
100   482  NM_164769.1  CG31904-RD, transcript variant D (CG31904), mRNA 
0   NM_139369.1  CG7879-RA, transcript variant A (CG7879), mRNA 
0   NM_167896.1  CG7879-RB, transcript variant B (CG7879), mRNA 
0   NM_001032407.1  CG33956-RA, transcript variant A (kay), mRNA 
0   NM_142727.1  CG6800-RA (CG6800), mRNA 
0   NM_079715.2  CG13418-RA (RpI12), mRNA 
0   NM_079375.2  CG5949-RA (DNApol-delta), mRNA 
0   NM_134591.2  CG1501-RA (unc), mRNA 
0   NM_130598.2  CG14805-RA (CG14805), mRNA 
0   NM_140363.2  CG11261-RA (CG11261), mRNA 
0   NM_164354.1  CG31973-RB, transcript variant B (CG31973), mRNA 
0   NM_165676.1  CG11804-RB, transcript variant B (ced-6), mRNA 
0   NM_136644.2  CG11804-RC, transcript variant C (ced-6), mRNA 
0   NM_165675.1  CG11804-RA, transcript variant A (ced-6), mRNA 
0   NM_136330.1  CG11665-RA (CG11665), mRNA 
0   NM_169947.1  CG17299-RF, transcript variant F (SNF4Agamma), mRNA 
0   NM_170259.2  CG31324-RA (CG31324), mRNA 
0   NM_137128.2  CG12864-RA, transcript variant A (Su(var)2-HP2), mRNA 
0   NM_206352.1  CG13478-RB, transcript variant B (shd), mRNA 
0   NM_140452.2  CG13478-RA, transcript variant A (shd), mRNA 
0   NM_140615.1  CG13041-RA (CG13041), mRNA 
0   NM_140616.1  CG13060-RA (CG13060), mRNA 
0   NM_176174.1  CG12864-RB, transcript variant B (Su(var)2-HP2), mRNA 
0   NM_166779.2  CG1732-RB, transcript variant B (CG1732), mRNA 
0   NM_143673.1  CG1732-RA, transcript variant A (CG1732), mRNA 
0   NM_165841.1  CG9015-RB, transcript variant B (en), mRNA 

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