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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
discarded
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
31904R-2 |
Symbol |
CG31904 |
Full Name |
CG31904 |
CG No |
CG31904 |
Old CG No |
CG31904 |
Synonyms |
anon-WO0149848.5, CG31904 |
Accession No (Link to NCBI) |
NM_164768.1 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Fan W, Lam SM, Xin J, Yang X, Liu Z, Liu Y, Wang Y, Shui G, Huang X. Drosophila TRF2 and TAF9 regulate lipid droplet size and phospholipid fatty acid composition. PLoS Genet (2017) 13(3) e1006664
[
PubMed ID = 28273089
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umetsu D, Dunst S, Dahmann C. An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor. PLoS One (2014) 9(12) e114340
[
PubMed ID = 25473846
]
[
RRC reference
]
Mummery-Widmer JL, Yamazaki M, Stoeger T, Novatchkova M, Bhalerao S, Chen D, Dietzl G, Dickson BJ, Knoblich JA. Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi. Nature (2009) 458(7241) 987-92
[
PubMed ID = 19363474
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCAGAACTGCCCGGTGATTTTA |
Primer Seq. 3' |
aatctagaggtaccATATATGAGGGGCACTACAGC |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CAGAACTGCC CGGTGATTTT ATCGGGGAGC CAGTGGAAAC GGAGTCCGGA GGCGGAATGG
0061 GCGGTAGTCT GGCCCTAGCC GCCCGTCGTA TCCGAAGCCG CCAGGTGCAC AGCATGGCCG
0121 TGCGAACGGG TAGTGCGTAT GATACCCTGG AGCGACCATA TCGGCATGAT AAATGTCGTG
0181 GTCGTTGGGC CAAATCGGCG GACTTTTACT TTGCCAGCTG CACACATGCC TTCAGTTCGC
0241 TGATCTTTTC GGAGCTCTCC ACCTTTGGAA TACTTCATGG CGGTTGGCTT TTGTTTATAA
0301 TCGCCTACCT GATGGGAATG CTATTTTACT CGCTGCCAAT ATTTTTGATC CAAGCCTTTT
0361 TGGGACAGTT TTCAAGTTCT GGAACCATAT CAGCATTTCG cGTGGCGCCA ATATTTAAAG
0421 GCAttggCTA CGCCATTCTG CTCCTCAATC TGGGAACGCT CACCTATTAC AGTATAGCAG
0481 CTGTAGTGCC CCTCATATAT |
in silico PCR Fragment |
0001 CAGAACTGCC CGGTGATTTT ATCGGGGAGC CAGTGGAAAC GGAGTCCGGA GGCGGAATGG
0061 GCGGTAGTCT GGCCCTAGCC GCCCGTCGTA TCCGAAGCCG CCAGGTGCAC AGCATGGCCG
0121 TGCGAACGGG TAGTGCGTAT GATACCCTGG AGCGACCATA TCGGCATGAT AAATGTCGTG
0181 GTCGTTGGGC CAAATCGGCG GACTTTTACT TTGCCAGCTG CACACATGCC TTCAGTTCGC
0241 TGATCTTTTC GGAGCTCTCC ACCTTTGGAA TACTTCATGG CGGTTGGCTT TTGTTTATAA
0301 TCGCCTACCT GATGGGAATG CTATTTTACT CGCTGCCAAT ATTTTTGATC CAAGCCTTTT
0361 TGGGACAGTT TTCAAGTTCT GGAACCATAT CAGCATTTCG CGTGGCGCCA ATATTTAAAG
0421 GCATTGGCTA CGCCATTCTG CTCCTCAATC TGGGAACGCT CACCTATTAC AGTATAGCAG
0481 CTGTAGTGCC CCTCATATAT |
Assemble Data |
31904R-2.IR_full 1 CAGAACTGCCCGGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31904R-2.in silico 1 CAGAACTGCCCGGTGATTTTATCGGGGAGCCAGTGGAAACGGAGTCCGGAGGCGGAATGG 60
31904R-2.IR_full 61 GCGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACAGCATGGCCG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31904R-2.in silico 61 GCGGTAGTCTGGCCCTAGCCGCCCGTCGTATCCGAAGCCGCCAGGTGCACAGCATGGCCG 120
31904R-2.IR_full 121 TGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATATCGGCATGATAAATGTCGTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31904R-2.in silico 121 TGCGAACGGGTAGTGCGTATGATACCCTGGAGCGACCATATCGGCATGATAAATGTCGTG 180
31904R-2.IR_full 181 GTCGTTGGGCCAAATCGGCGGACTTTTACTTTGCCAGCTGCACACATGCCTTCAGTTCGC 240
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31904R-2.in silico 181 GTCGTTGGGCCAAATCGGCGGACTTTTACTTTGCCAGCTGCACACATGCCTTCAGTTCGC 240
31904R-2.IR_full 241 TGATCTTTTCGGAGCTCTCCACCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAA 300
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31904R-2.in silico 241 TGATCTTTTCGGAGCTCTCCACCTTTGGAATACTTCATGGCGGTTGGCTTTTGTTTATAA 300
31904R-2.IR_full 301 TCGCCTACCTGATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTT 360
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31904R-2.in silico 301 TCGCCTACCTGATGGGAATGCTATTTTACTCGCTGCCAATATTTTTGATCCAAGCCTTTT 360
31904R-2.IR_full 361 TGGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAATATTTAAAG 420
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31904R-2.in silico 361 TGGGACAGTTTTCAAGTTCTGGAACCATATCAGCATTTCGCGTGGCGCCAATATTTAAAG 420
31904R-2.IR_full 421 GCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTCACCTATTACAGTATAGCAG 480
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31904R-2.in silico 421 GCATTGGCTACGCCATTCTGCTCCTCAATCTGGGAACGCTCACCTATTACAGTATAGCAG 480
31904R-2.IR_full 481 CTGTAGTGCCCCTCATATAT 500
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31904R-2.in silico 481 CTGTAGTGCCCCTCATATAT 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
1 |
NM_164766.1 |
CG13796-RB, transcript variant B (CG13796), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_135296.1 |
CG13796-RA, transcript variant A (CG13796), mRNA |
100 |
482 |
0 |
0 |
1 |
NM_164767.1 |
CG13796-RC, transcript variant C (CG13796), mRNA |
100 |
482 |
0 |
0 |
0 |
NM_164768.1 |
CG31904-RB, transcript variant B (CG31904), mRNA |
100 |
482 |
0 |
0 |
0 |
NM_164769.1 |
CG31904-RD, transcript variant D (CG31904), mRNA |
0 |
0 |
2 |
5 |
3 |
NM_139369.1 |
CG7879-RA, transcript variant A (CG7879), mRNA |
0 |
0 |
2 |
5 |
3 |
NM_167896.1 |
CG7879-RB, transcript variant B (CG7879), mRNA |
0 |
0 |
2 |
3 |
5 |
NM_001032407.1 |
CG33956-RA, transcript variant A (kay), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_142727.1 |
CG6800-RA (CG6800), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_079715.2 |
CG13418-RA (RpI12), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_079375.2 |
CG5949-RA (DNApol-delta), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_134591.2 |
CG1501-RA (unc), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_130598.2 |
CG14805-RA (CG14805), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_140363.2 |
CG11261-RA (CG11261), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_164354.1 |
CG31973-RB, transcript variant B (CG31973), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_165676.1 |
CG11804-RB, transcript variant B (ced-6), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_136644.2 |
CG11804-RC, transcript variant C (ced-6), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_165675.1 |
CG11804-RA, transcript variant A (ced-6), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_136330.1 |
CG11665-RA (CG11665), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_169947.1 |
CG17299-RF, transcript variant F (SNF4Agamma), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_170259.2 |
CG31324-RA (CG31324), mRNA |
0 |
0 |
0 |
6 |
5 |
NM_137128.2 |
CG12864-RA, transcript variant A (Su(var)2-HP2), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_206352.1 |
CG13478-RB, transcript variant B (shd), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_140452.2 |
CG13478-RA, transcript variant A (shd), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_140615.1 |
CG13041-RA (CG13041), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_140616.1 |
CG13060-RA (CG13060), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_176174.1 |
CG12864-RB, transcript variant B (Su(var)2-HP2), mRNA |
0 |
0 |
0 |
4 |
9 |
NM_166779.2 |
CG1732-RB, transcript variant B (CG1732), mRNA |
0 |
0 |
0 |
4 |
9 |
NM_143673.1 |
CG1732-RA, transcript variant A (CG1732), mRNA |
0 |
0 |
0 |
4 |
6 |
NM_165841.1 |
CG9015-RB, transcript variant B (en), mRNA |
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