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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 31810R-2 
 Symbol CG31810  Full Name CG31810 
 CG No CG31810  Old CG No CG31810 
 Synonyms BcDNA:RE06583, CG31810 
 Accession No (Link to NCBI) NM_165198.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTGGAACCGTTCTTCAGGCCGA 
 Primer Seq. 3'
aatctagaggtaccAGCAGTCAAATTGGGATGGGG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TGGAACCGTT CTTCAGGCCG AATTTGCCAA AGACTTTGGC GGAAAAATTC GGAAATTGGG 
0061 CAGTGGTGAC CGGTGCGACC GATGGAATCG GAAAGGAATA TGCCAGGGAG TTGGCTCGTC 
0121 AGGGTCTTAA CCTGGTGCTC GTTTCGCGGA AAGAGGAAAA GCTGATTGCA GTCACCAACG 
0181 AGATTGGGAG CCAATATAAT GTGAAAATCA AGTGGATTGT TGCGGACTTT GCAAAGGGAC 
0241 GCGAGGTGTA CGCTCATATC GAAAAGGAAC TGAATGGAAT CGAAGTTGGA ATTTTGGTCA 
0301 ACAATGTGGG CACGATTCAC GACCCGGAAA GCCTTGACAA GGTATCGGAG GACATGTTGT 
0361 GGGACCTTCT CACCGTCAAC GTGGGATCGG TTACCATGCT CACCCGCAAG ATCCTGCCCC 
0421 AGATGATTAG TCGTCGAAAG GGAGCAATTG TTAACCTGGG ATCGTCCTCC GAACTCCAGC 
0481 CCCATCCCAA TTTGACTGCT  
 in silico PCR Fragment
0001 TGGAACCGTT CTTCAGGCCG AATTTGCCAA AGACTTTGGC GGAGAAATTC GGAAATTGGG 
0061 CAGTGGTGAC CGGTGCGACC GATGGAATCG GAAAGGAATA TGCCAGGGAG TTGGCTCGTC 
0121 AGGGTCTTAA CCTGGTGCTC GTTTCGCGGA AAGAGGAAAA GCTGATTGCA GTCACCAACG 
0181 AGATTGGGAG CCAATATAAT GTGAAAATCA AGTGGATTGT TGCGGACTTT GCAAAGGGAC 
0241 GCGAGGTGTA CGCTCATATC GAAAAGGAAC TGAATGGAAT CGAAGTTGGA ATTTTGGTCA 
0301 ACAATGTGGG CACGATTCAC GACCCGGAAA GCCTTGACAA GGTATCGGAG GACATGTTGT 
0361 GGGACCTTCT CACCGTCAAC GTGGGATCGG TTACCATGCT CACCCGCAAG ATCCTGCCCC 
0421 AGATGATTAG TCGTCGAAAG GGAGCAATTG TTAACCTCGG ATCCTCCTCC GAACTCCAGC 
0481 CCCATCCCAA TTTGACTGCT  
 Assemble Data

31810R-2.IR_full       1   TGGAACCGTTCTTCAGGCCGAATTTGCCAAAGACTTTGGCGGAAAAATTCGGAAATTGGG 60
                           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
31810R-2.in silico     1   TGGAACCGTTCTTCAGGCCGAATTTGCCAAAGACTTTGGCGGAGAAATTCGGAAATTGGG 60


31810R-2.IR_full       61  CAGTGGTGACCGGTGCGACCGATGGAATCGGAAAGGAATATGCCAGGGAGTTGGCTCGTC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31810R-2.in silico     61  CAGTGGTGACCGGTGCGACCGATGGAATCGGAAAGGAATATGCCAGGGAGTTGGCTCGTC 120


31810R-2.IR_full       121 AGGGTCTTAACCTGGTGCTCGTTTCGCGGAAAGAGGAAAAGCTGATTGCAGTCACCAACG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31810R-2.in silico     121 AGGGTCTTAACCTGGTGCTCGTTTCGCGGAAAGAGGAAAAGCTGATTGCAGTCACCAACG 180


31810R-2.IR_full       181 AGATTGGGAGCCAATATAATGTGAAAATCAAGTGGATTGTTGCGGACTTTGCAAAGGGAC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31810R-2.in silico     181 AGATTGGGAGCCAATATAATGTGAAAATCAAGTGGATTGTTGCGGACTTTGCAAAGGGAC 240


31810R-2.IR_full       241 GCGAGGTGTACGCTCATATCGAAAAGGAACTGAATGGAATCGAAGTTGGAATTTTGGTCA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31810R-2.in silico     241 GCGAGGTGTACGCTCATATCGAAAAGGAACTGAATGGAATCGAAGTTGGAATTTTGGTCA 300


31810R-2.IR_full       301 ACAATGTGGGCACGATTCACGACCCGGAAAGCCTTGACAAGGTATCGGAGGACATGTTGT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31810R-2.in silico     301 ACAATGTGGGCACGATTCACGACCCGGAAAGCCTTGACAAGGTATCGGAGGACATGTTGT 360


31810R-2.IR_full       361 GGGACCTTCTCACCGTCAACGTGGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCCC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31810R-2.in silico     361 GGGACCTTCTCACCGTCAACGTGGGATCGGTTACCATGCTCACCCGCAAGATCCTGCCCC 420


31810R-2.IR_full       421 AGATGATTAGTCGTCGAAAGGGAGCAATTGTTAACCTGGGATCGTCCTCCGAACTCCAGC 480
                           ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
31810R-2.in silico     421 AGATGATTAGTCGTCGAAAGGGAGCAATTGTTAACCTCGGATCCTCCTCCGAACTCCAGC 480


31810R-2.IR_full       481 CCCATCCCAATTTGACTGCT 500
                           ||||||||||||||||||||
31810R-2.in silico     481 CCCATCCCAATTTGACTGCT 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_165198.1  CG31810-RA (CG31810), mRNA 
60.37   291  NM_165199.1  CG31809-RA (CG31809), mRNA 
6.01   29  23  81  108  NM_165197.2  CG13284-RB, transcript variant B (CG13284), mRNA 
6.01   29  23  81  108  NM_135972.2  CG13284-RA, transcript variant A (CG13284), mRNA 
0.2   NM_078545.2  CG12653-RA (btd), mRNA 
0   NM_143706.2  CG10622-RA, transcript variant A (Sucb), mRNA 
0   NM_078884.2  CG1762-RA (betaInt-nu), mRNA 
0   NM_135978.1  CG12288-RA (CG12288), mRNA 
0   NM_136312.1  CG3107-RA, transcript variant A (CG3107), mRNA 
0   NM_165416.1  CG3107-RB, transcript variant B (CG3107), mRNA 
0   NM_001043005.1  CG3107-RC, transcript variant C (CG3107), mRNA 
0   NM_132027.2  CG15772-RA (CG15772), mRNA 
0   NM_137363.2  CG6550-RA (CG6550), mRNA 
0   NM_206620.4  CG32782-RD, transcript variant D (tlk), mRNA 
0   NM_130717.3  CG32782-RC, transcript variant C (tlk), mRNA 
0   NM_165626.1  CG8740-RB, transcript variant B (CG8740), mRNA 
0   NM_165627.1  CG8740-RC, transcript variant C (CG8740), mRNA 
0   NM_169264.1  CG9735-RA, transcript variant A (Aats-trp), mRNA 
0   16  14  NM_135973.1  CG6012-RA (CG6012), mRNA 
0   16  NM_132192.1  CG1444-RA (CG1444), mRNA 
0   NM_137151.2  CG10212-RA (SMC2), mRNA 
0   NM_135907.1  CG15258-RA (CG15258), mRNA 
0   NM_142659.1  CG17271-RA, transcript variant A (CG17271), mRNA 
0   NM_132086.1  CG15894-RA (CG15894), mRNA 
0   NM_132895.2  CG9984-RA (TH1), mRNA 
0   NM_135970.1  CG13282-RA (CG13282), mRNA 
0   NR_001734.1  CR30066, miscRNA 
0   NM_001014521.1  CG30048-RB, transcript variant B (CG30048), mRNA 
0   NM_165895.3  CG30048-RA, transcript variant A (CG30048), mRNA 
0   NM_130646.2  CG14045-RA (CG14045), mRNA 

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