Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
31769R-1 |
Symbol |
CG31769 |
Full Name |
CG31769 |
CG No |
CG31769 |
Old CG No |
CG31769 |
Synonyms |
BcDNA:RH26533, CG31769 |
Accession No (Link to NCBI) |
NM_165083.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCTAGGCATTGGAACGTGCTTG |
Primer Seq. 3' |
aatctagaggtaccGTGTGTGGATGTTGGATTTGG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CTAgGCATTG GAACGTGCTT GAAACAGTCG TAAATAATAT GCGGATCACT AAAAGGCCGT
0061 GGATAGTTAC AAAAACTAAA CCGTGCGGTG AGGTGATTAG GGAAACCTAC ATGTTGAGCC
0121 CCAACGAAGA GGAACTCATA AGGAGAACGG AAGTCATGCT CTTGCAAGCT CAAGGAAAAT
0181 TGGAATGTTT ACTTAGCCAG TTGCAATCGA CATTACGACT TGGCAGTGTC TACAATAATC
0241 CCTTTCTAAA CCCGGTCGGT TTTGGTTTTC CTGACTATAA CGTCCTTCAA AATTTTCCGT
0301 TTATCCCGGA ATTGAAGCCG CAACGTATTC CTCCCGAAGA AGGTCGCAGT AATGAAAATA
0361 ATCCTCGCCG AGAAGATCCG CGGGTAAATG AGCAGGATGC GTGGAATTTA CGCCCTCAAG
0421 ACGTCCCCAA AGANAATGAA CACATTCCNC NATAGTGAAT CGGATAGTGA TAGATGGCTG
0481 CCAAATCCAA CATCCNCACA C |
in silico PCR Fragment |
0001 CTAGGCATTG GAACGTGCTT GAAACAGTCG TAAATAATAT GCGGATCACT AAAAGGCCGT
0061 GGATAGTTAC AAAAACTAAA CCGTGCGGTG AGGTGATTAG GGAAACCTAC ATGTTGAGCC
0121 CCAACGAAGA GGAACTCATA AGGAGAACGG AAGTCATGCT CTTGCAAGCT CAAGGAAAAT
0181 TGGAATGTTT ACTTAGCCAG TTTCAACCGA CATTACGACT TGGCAGTGTC TACAATAATC
0241 CCTTTCTAAA CCCGGTCGGT TTTGGTTTTC CTGACTATAA CGTCTTCCAA AATTTTCCGT
0301 TTATCCCGGA ATTTAAGCCG CAACGTATTC CTCCCGAAGA AGATCGCAGT AATGAAAATA
0361 ATCCTCGCCG AGAAGATCCG CGGGTAAATG AGCAGGATGC GTGGAATTTA CGCCCTCAAG
0421 ACGTCCCCAA AGAAAATGAA CACATTCC-C AATAGTGAAT CGGATAGTGA TAGATGGCTG
0481 CCAAATCCAA CATCCACACA C |
Assemble Data |
31769R-1.IR_full 1 CTAGGCATTGGAACGTGCTTGAAACAGTCGTAAATAATATGCGGATCACTAAAAGGCCGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31769R-1.in silico 1 CTAGGCATTGGAACGTGCTTGAAACAGTCGTAAATAATATGCGGATCACTAAAAGGCCGT 60
31769R-1.IR_full 61 GGATAGTTACAAAAACTAAACCGTGCGGTGAGGTGATTAGGGAAACCTACATGTTGAGCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31769R-1.in silico 61 GGATAGTTACAAAAACTAAACCGTGCGGTGAGGTGATTAGGGAAACCTACATGTTGAGCC 120
31769R-1.IR_full 121 CCAACGAAGAGGAACTCATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGGAAAAT 180
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31769R-1.in silico 121 CCAACGAAGAGGAACTCATAAGGAGAACGGAAGTCATGCTCTTGCAAGCTCAAGGAAAAT 180
31769R-1.IR_full 181 TGGAATGTTTACTTAGCCAGTTGCAATCGACATTACGACTTGGCAGTGTCTACAATAATC 240
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
31769R-1.in silico 181 TGGAATGTTTACTTAGCCAGTTTCAACCGACATTACGACTTGGCAGTGTCTACAATAATC 240
31769R-1.IR_full 241 CCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGACTATAACGTCCTTCAAAATTTTCCGT 300
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
31769R-1.in silico 241 CCTTTCTAAACCCGGTCGGTTTTGGTTTTCCTGACTATAACGTCTTCCAAAATTTTCCGT 300
31769R-1.IR_full 301 TTATCCCGGAATTGAAGCCGCAACGTATTCCTCCCGAAGAAGGTCGCAGTAATGAAAATA 360
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
31769R-1.in silico 301 TTATCCCGGAATTTAAGCCGCAACGTATTCCTCCCGAAGAAGATCGCAGTAATGAAAATA 360
31769R-1.IR_full 361 ATCCTCGCCGAGAAGATCCGCGGGTAAATGAGCAGGATGCGTGGAATTTACGCCCTCAAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31769R-1.in silico 361 ATCCTCGCCGAGAAGATCCGCGGGTAAATGAGCAGGATGCGTGGAATTTACGCCCTCAAG 420
31769R-1.IR_full 421 ACGTCCCCAAAGANAATGAACACATTCCNCNATAGTGAATCGGATAGTGATAGATGGCTG 480
||||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||
31769R-1.in silico 421 ACGTCCCCAAAGAAAATGAACACATTCC-CAATAGTGAATCGGATAGTGATAGATGGCTG 480
31769R-1.IR_full 481 CCAAATCCAACATCCNCACAC 501
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31769R-1.in silico 481 CCAAATCCAACATCCACACAC 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_165083.2 |
CG31769-RA (CG31769), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_140580.1 |
CG5414-RA (CG5414), mRNA |
0 |
0 |
2 |
3 |
2 |
NM_136815.1 |
CG13222-RA (CG13222), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_080152.2 |
CG5092-RA (Tor), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_079743.2 |
CG5163-RA (TfIIA-S), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_167261.1 |
CG32670-RA (CG32670), mRNA |
0 |
0 |
0 |
4 |
4 |
NR_001945.1 |
CR32489, miscRNA |
0 |
0 |
0 |
4 |
3 |
NM_144487.1 |
CG5518-RA (sda), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_167260.1 |
CG32671-RA (CG32671), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_132399.1 |
CG2885-RA (RabX2), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_132414.1 |
CG9807-RA (CG9807), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_167238.1 |
CG32673-RA (CG32673), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_167237.1 |
CG32678-RA (Rab9D), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_144357.2 |
CG13475-RA (HGTX), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_164430.2 |
CG31666-RD, transcript variant D (CG31666), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_175956.1 |
CG33003-RA (CG33003), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_166128.1 |
CG18255-RG, transcript variant G (Strn-Mlck), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_169973.1 |
CG31173-RA (Gr93c), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_166125.2 |
CG18255-RA, transcript variant A (Strn-Mlck), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_166126.1 |
CG18255-RC, transcript variant C (Strn-Mlck), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_138036.2 |
CG3209-RA, transcript variant A (CG3209), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_166658.1 |
CG3209-RB, transcript variant B (CG3209), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_166127.1 |
CG18255-RF, transcript variant F (Strn-Mlck), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_135100.2 |
CG7251-RA (CG7251), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_137227.2 |
CG8315-RA (CG8315), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_079030.2 |
CG18255-RB, transcript variant B (Strn-Mlck), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_137905.2 |
CG30194-RB, transcript variant B (CG30194), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_206203.1 |
CG30194-RC, transcript variant C (CG30194), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_206204.1 |
CG30194-RD, transcript variant D (CG30194), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_165368.1 |
CG18362-RE, transcript variant E (Mio), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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+ |
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DB |
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++ |
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DC |
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++ |
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DM |
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++ |
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VM |
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+ |
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VB |
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+ |
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Dcompartment |
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Penetrance |
+ |
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