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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 31454R-3 
 Symbol CG31454  Full Name CG31454 
 CG No CG31454  Old CG No CG31454 
 Synonyms CG11740, CG31454 
 Accession No (Link to NCBI) NM_169224.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGGCACAGAGTAAACTAGCCGA 
 Primer Seq. 3'
aatctagaggtaccCGGTGATACTGGCACCCATGA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GGCACAGAGT AAACTAGCCG AGGCCGCATA CAAATGCAGC TGCCAGGAGT TCGTGCATCC 
0061 TTGGACCTCC AGCTGCGCCT GTGCGACGGC TGGGATGCTA TTATCCCTAA TCCCTGGCAC 
0121 ATTTAAGACC TATAGTATGG TCTACATGTT GGCACTTTTA ATGCGCAGGC GCATNTCCAT 
0181 CGCTCAAGGA CCTTGGCAGG ACTTTAGCCA GTACATTGCA GTCGACGGCT TTCCTTTCGC 
0241 TAAATGGAAG CCTCTTTGTC CTCGCCATTT GCCTGGTGCG CCAGTTTCTC GGTGGTTTCT 
0301 ACTTCGCTAC CGCCGCATGG TTGCCAGCAC TTTTGGTGAG CTCCATATCG CTAGCAGTCG 
0361 AGCGTCCGCA GCGCCGTGCT CCACTGGCAT TGTATGTGGC CAATGTGGGC ATCGAAACGC 
0421 TATGGAAAAT GTTAGAGGCC CGAGGACTGG TGCGATCCAT TGCCAAAGGA CAGGTGCTCA 
0481 TCATGGGTGC CAGTATCACC G 
 in silico PCR Fragment
0001 GGCACAGAGT AAACTAGCCG AGGCCGCATA CAAATGCAGC TGCCAGGAGT TCGTGCATCC 
0061 TTGGACCTCC AGCTGCGCCT GTGCGACGGC TGGGATGCTA TTATCCCTAA TCCCTGGCAC 
0121 ATTTAAGACC TATAGTATGG TCTACATGTT GGCACTTTTA ATGCGCAGGC GCAT-TCCAT 
0181 CGCTCAAGGA CCTTGGCAGG ACTTTAGCCA GTACATTGCA GTCGACGGCT TTCCTTTCGC 
0241 TAAATGGAAG CCTCTTTGTC CTCGCCATTT GCCTGGTGCG CCAGTTTCTC GGTGGTTTCT 
0301 ACTTCGCTAC CGCCGCATGG TTGCCAGCAC TTTTGGTGAG CTCCATATCG CTAGCAGTCG 
0361 AGCGTCCGCA GCGCCGTGCT CCACTGGCAT TGTATGTGGC CAATGTGGGC ATCGAAACGC 
0421 TATGGAAAAT GTTAGAGGCC CGAGGACTGG TGCGATCCAT TGCCAAAGGA CAGGTGCTCA 
0481 TCATGGGTGC CAGTATCACC G 
 Assemble Data

31454R-3.IR_full       1   GGCACAGAGTAAACTAGCCGAGGCCGCATACAAATGCAGCTGCCAGGAGTTCGTGCATCC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31454R-3.in silico     1   GGCACAGAGTAAACTAGCCGAGGCCGCATACAAATGCAGCTGCCAGGAGTTCGTGCATCC 60


31454R-3.IR_full       61  TTGGACCTCCAGCTGCGCCTGTGCGACGGCTGGGATGCTATTATCCCTAATCCCTGGCAC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31454R-3.in silico     61  TTGGACCTCCAGCTGCGCCTGTGCGACGGCTGGGATGCTATTATCCCTAATCCCTGGCAC 120


31454R-3.IR_full       121 ATTTAAGACCTATAGTATGGTCTACATGTTGGCACTTTTAATGCGCAGGCGCATNTCCAT 180
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
31454R-3.in silico     121 ATTTAAGACCTATAGTATGGTCTACATGTTGGCACTTTTAATGCGCAGGCGCAT-TCCAT 180


31454R-3.IR_full       181 CGCTCAAGGACCTTGGCAGGACTTTAGCCAGTACATTGCAGTCGACGGCTTTCCTTTCGC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31454R-3.in silico     181 CGCTCAAGGACCTTGGCAGGACTTTAGCCAGTACATTGCAGTCGACGGCTTTCCTTTCGC 240


31454R-3.IR_full       241 TAAATGGAAGCCTCTTTGTCCTCGCCATTTGCCTGGTGCGCCAGTTTCTCGGTGGTTTCT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31454R-3.in silico     241 TAAATGGAAGCCTCTTTGTCCTCGCCATTTGCCTGGTGCGCCAGTTTCTCGGTGGTTTCT 300


31454R-3.IR_full       301 ACTTCGCTACCGCCGCATGGTTGCCAGCACTTTTGGTGAGCTCCATATCGCTAGCAGTCG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31454R-3.in silico     301 ACTTCGCTACCGCCGCATGGTTGCCAGCACTTTTGGTGAGCTCCATATCGCTAGCAGTCG 360


31454R-3.IR_full       361 AGCGTCCGCAGCGCCGTGCTCCACTGGCATTGTATGTGGCCAATGTGGGCATCGAAACGC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31454R-3.in silico     361 AGCGTCCGCAGCGCCGTGCTCCACTGGCATTGTATGTGGCCAATGTGGGCATCGAAACGC 420


31454R-3.IR_full       421 TATGGAAAATGTTAGAGGCCCGAGGACTGGTGCGATCCATTGCCAAAGGACAGGTGCTCA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31454R-3.in silico     421 TATGGAAAATGTTAGAGGCCCGAGGACTGGTGCGATCCATTGCCAAAGGACAGGTGCTCA 480


31454R-3.IR_full       481 TCATGGGTGCCAGTATCACCG 501
                           |||||||||||||||||||||
31454R-3.in silico     481 TCATGGGTGCCAGTATCACCG 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_169224.1  CG31454-RA (CG31454), mRNA 
1.03   22  45  49  NM_169225.1  CG31259-RA (CG31259), mRNA 
0.2   NM_078759.2  CG11020-RA, transcript variant A (nompC), mRNA 
0.2   NM_205912.1  CG11020-RB, transcript variant B (nompC), mRNA 
0   NM_136745.3  CG12892-RA (Caf1-105), mRNA 
0   NM_078601.2  CG9533-RA (rut), mRNA 
0   NM_137573.2  CG10073-RA (CG10073), mRNA 
0   NM_166290.1  CG30120-RA (CG30120), mRNA 
0   NM_134600.1  CG1494-RA (CG1494), mRNA 
0   NM_142297.2  CG14900-RA (Cad89D), mRNA 
0   NM_142394.1  CG16766-RA (CG16766), mRNA 
0   NM_175994.1  CG32988-RA (CG32988), mRNA 
0   NM_141725.1  CG6241-RA (CG6241), mRNA 
0   NM_142538.1  CG5237-RA (CG5237), mRNA 
0   NM_169674.1  CG31293-RA (rec), mRNA 
0   NM_144056.2  CG15234-RA (CG15234), mRNA 
0   NM_206776.1  CG7206-RB, transcript variant B (CG7206), mRNA 
0   NM_133038.2  CG7206-RA, transcript variant A (CG7206), mRNA 
0   NM_134624.2  CG17598-RA (CG17598), mRNA 
0   NM_080018.1  CG6890-RA (Tollo), mRNA 
0   NM_135726.2  CG6417-RA (Oatp33Eb), mRNA 
0   NM_136059.2  CG10369-RA (Irk3), mRNA 
0   NM_078493.2  CG4206-RA (Mcm3), mRNA 
0   NM_143460.2  CG7601-RA (CG7601), mRNA 
0   NM_166114.2  CG30087-RA (CG30087), mRNA 
0   NM_170524.1  CG12072-RA (wts), mRNA 
0   NM_132792.2  CG6227-RA (CG6227), mRNA 
0   NM_136564.1  CG14743-RA (CG14743), mRNA 
0   NM_078604.3  CG32592-RA (hiw), mRNA 
0   NM_164854.1  CG3747-RC, transcript variant C (Eaat1), mRNA 

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