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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 31002R-1 
 Symbol CG31002  Full Name CG31002 
 CG No CG31002  Old CG No CG31002 
 Synonyms CG15569, CG31002 
 Accession No (Link to NCBI) NM_143609.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTTCCTGGTTACTCGGAAGGTG 
 Primer Seq. 3'
aatctagaggtaccGGGAGACTGCAGGTAAGAAAT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TTCCTGGTTA CTCGGAAGGT GCTCGCATCC TGGCAGTGTT CCCTTTGCCA AGTTCTTCGC 
0061 ATTACTTTTT CGCCTTACCC TACCTTAAGA GTTTGGCCTC CCTGGGCCAC GAAATAACCA 
0121 GTGTAAGTCC GTATCCACAA AGGGAGCCGT TTAGGAATAT ACACGATATT CCAGTTCCCG 
0181 AGGTTTTCGA AAACTTTAAT GAGGTCCTTA GGATTGCATC TACTCCCAGG AGCACCTGGC 
0241 AAAGTAGTGA TTTCATCAAC GAATATGTCC TTAATCTTAC GAAGACAGTG CTGAATAACG 
0301 AGGGCGTAAG GCGCGATATT CTAGGCCCAC AGAAGCCCCA TTTCGATCTT GTGATAATGG 
0361 ATCTCTGGCG AATGGACGTG CTCAGTGGCC TGGCTGCCTA TTTTGATGCC CCGATCATCG 
0421 GAATGGCTTC CTATGGCACC GACTGGAAGA TTGACGAACT GATGGGCAAC GTCTCACCGA 
0481 TTTCTTACCT GCAGTCTCCC  
 in silico PCR Fragment
0001 TTCCTGGTTA CTCGGAAGGT GCTCGCATCC TGGCAGTGTT CCCTTTGCCA AGTTCTTCGC 
0061 ATTACTTTTT CGCCTTACCC TACCTTAAGA GTTTGGCCTC CCTGGGCCAC GAAATAACCA 
0121 GTGTAAGTCC GTATCCACAA AGGGAGCCGT TTAGGAATAT ACACGATATT CCAGTTCCCG 
0181 AGGTTTTCGA AAACTTTAAT GAGGTCCTTA GGATTGCATC TACTCCCAGG AGCACCTGGC 
0241 AAAGTAGTGA TTTCATCAAC GAATATGTCC TTAATCTTAC GAAGACAGTG CTGAATAACG 
0301 AGGGCGTAAG GCGCGATATT CTAGGCCCAC AGAAGCCCCA TTTCGATCTT GTGATAATGG 
0361 ATCTCTGGCG AATGGACGTG CTCAGTGGCC TGGCTGCCTA TTTTGATGCC CCGATCATCG 
0421 GAATGGCTTC CTATGGCACC GACTGGAAGA TTGACGAACT GATGGGCAAC GTCTCACCGA 
0481 TTTCTTACCT GCAGTCTCCC  
 Assemble Data

31002R-1.IR_full       1   TTCCTGGTTACTCGGAAGGTGCTCGCATCCTGGCAGTGTTCCCTTTGCCAAGTTCTTCGC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31002R-1.in silico     1   TTCCTGGTTACTCGGAAGGTGCTCGCATCCTGGCAGTGTTCCCTTTGCCAAGTTCTTCGC 60


31002R-1.IR_full       61  ATTACTTTTTCGCCTTACCCTACCTTAAGAGTTTGGCCTCCCTGGGCCACGAAATAACCA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31002R-1.in silico     61  ATTACTTTTTCGCCTTACCCTACCTTAAGAGTTTGGCCTCCCTGGGCCACGAAATAACCA 120


31002R-1.IR_full       121 GTGTAAGTCCGTATCCACAAAGGGAGCCGTTTAGGAATATACACGATATTCCAGTTCCCG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31002R-1.in silico     121 GTGTAAGTCCGTATCCACAAAGGGAGCCGTTTAGGAATATACACGATATTCCAGTTCCCG 180


31002R-1.IR_full       181 AGGTTTTCGAAAACTTTAATGAGGTCCTTAGGATTGCATCTACTCCCAGGAGCACCTGGC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31002R-1.in silico     181 AGGTTTTCGAAAACTTTAATGAGGTCCTTAGGATTGCATCTACTCCCAGGAGCACCTGGC 240


31002R-1.IR_full       241 AAAGTAGTGATTTCATCAACGAATATGTCCTTAATCTTACGAAGACAGTGCTGAATAACG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31002R-1.in silico     241 AAAGTAGTGATTTCATCAACGAATATGTCCTTAATCTTACGAAGACAGTGCTGAATAACG 300


31002R-1.IR_full       301 AGGGCGTAAGGCGCGATATTCTAGGCCCACAGAAGCCCCATTTCGATCTTGTGATAATGG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31002R-1.in silico     301 AGGGCGTAAGGCGCGATATTCTAGGCCCACAGAAGCCCCATTTCGATCTTGTGATAATGG 360


31002R-1.IR_full       361 ATCTCTGGCGAATGGACGTGCTCAGTGGCCTGGCTGCCTATTTTGATGCCCCGATCATCG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31002R-1.in silico     361 ATCTCTGGCGAATGGACGTGCTCAGTGGCCTGGCTGCCTATTTTGATGCCCCGATCATCG 420


31002R-1.IR_full       421 GAATGGCTTCCTATGGCACCGACTGGAAGATTGACGAACTGATGGGCAACGTCTCACCGA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
31002R-1.in silico     421 GAATGGCTTCCTATGGCACCGACTGGAAGATTGACGAACTGATGGGCAACGTCTCACCGA 480


31002R-1.IR_full       481 TTTCTTACCTGCAGTCTCCC 500
                           ||||||||||||||||||||
31002R-1.in silico     481 TTTCTTACCTGCAGTCTCCC 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 

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