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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 30447R-2 
 Symbol CG30447  Full Name CG30447 
 CG No CG30447  Old CG No CG30447 
 Synonyms CG30447 
 Accession No (Link to NCBI) NM_166377.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCTCAGAAGGGTATGAGCGACG 
 Primer Seq. 3'
aatctagaggtaccTCCAGAGGAATTGGGTCGGAA 
 Predicted Fragment Size
496 
 IR fragment full Seq
0001 NTCAGAAGGG TATGAGCGAC gNCACTAGTA GCGACTTACG TAACGAGTCA GCACATCCAA 
0061 CATTCTCTGG GACTAAGCAA CTTTTCACGT TAAGCTCGCC GTTTTACCAG GGACCCACGT 
0121 CCTTTGGCGG TAGTGCGGCT ATTACTCGCG TTTGGAACAA TTTTAAGTGC AGCAGAATAA 
0181 TTGCTTCTGA AATCAACAAA AAGATGGAAC CGCCAANBTT ATTCGGAGTC CTTAGAGTCG 
0241 AAGATCATGA ACACGCCGTC GTACTGTACG CTCTTTTAAA TAGGAAAGAA ATTACGTATA 
0301 GCAAATACCG GAATATACAG AATGAGTCCC GGATAGGAAT CATTAAAGAG GTGGAGGAAA 
0361 CACAAATGCC AGAAACCACA TATAAGAAGA AATCGCCTAC GAAACCAGTT ATGCGAACAT 
0421 TCTACTTCTC GGAGCCTATA CCGCTAATGC AACATAATTC AAAGCGCAAT TTTGTATTTT 
0481 CCGACCCAAT TcCTCTGGA 
 in silico PCR Fragment
0001 CTCAGAAGGG TATGAGCGAC GCCACTAGTA GCGACTTACG TAACGAGTCA GCACATCCAA 
0061 CATTCTCTGG GACTAAGCAA CTTTTCACGT TAAGCTCGCC GTTTTACCAG GGACCCACGT 
0121 CCTTTGGCGG TAGTGCGGCT ATTACTCGCG TTTGGAACAA TTTTAAGTGC AGCAGAATAC 
0181 TTGCTTCTGA AATCAACAAA AAGATGGAAC CGCCAA-CTT ATTCGGAGTC CTTAGAGTCG 
0241 AAGATCATGA A-ACGCCGTC GT-CTGTACG CTCTTTTAAA TAGGAAAGAA ATTACGTATA 
0301 GCAAATACCG GAATATACAG AATGAGTCCC GGATAGGAAT CATTAAAGAG GTGGAGGAAA 
0361 CACAAATGCC AGAAACCACA TATAAGAAGA AATCGCCTAC GAAACCAGTT ATGCGAACAT 
0421 TCTACTTCTC GGAGCCTATA CCGCTAATGC AACATAATTC AAAGCGCAAT TTTGTATTTT 
0481 CCGACCCAAT TCCTCTGGA 
 Assemble Data

30447R-2.IR_full        1   TCAGAAGGGTATGAGCGACGNCACTAGTAGCGACTTACGTAACGAGTCAGCACATCCAA 59
                            |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
30447R-2.in silico      1   TCAGAAGGGTATGAGCGACGCCACTAGTAGCGACTTACGTAACGAGTCAGCACATCCAA 59


30447R-2.IR_full       61  CATTCTCTGGGACTAAGCAACTTTTCACGTTAAGCTCGCCGTTTTACCAGGGACCCACGT 119
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30447R-2.in silico     61  CATTCTCTGGGACTAAGCAACTTTTCACGTTAAGCTCGCCGTTTTACCAGGGACCCACGT 119


30447R-2.IR_full       121 CCTTTGGCGGTAGTGCGGCTATTACTCGCGTTTGGAACAATTTTAAGTGCAGCAGAATAA 179
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
30447R-2.in silico     121 CCTTTGGCGGTAGTGCGGCTATTACTCGCGTTTGGAACAATTTTAAGTGCAGCAGAATAC 179


30447R-2.IR_full       181 TTGCTTCTGAAATCAACAAAAAGATGGAACCGCCAANBTTATTCGGAGTCCTTAGAGTCG 239
                           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
30447R-2.in silico     181 TTGCTTCTGAAATCAACAAAAAGATGGAACCGCCAA-CTTATTCGGAGTCCTTAGAGTCG 239


30447R-2.IR_full       241 AAGATCATGAACACGCCGTCGTACTGTACGCTCTTTTAAATAGGAAAGAAATTACGTATA 299
                           ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||
30447R-2.in silico     241 AAGATCATGAA-ACGCCGTCGT-CTGTACGCTCTTTTAAATAGGAAAGAAATTACGTATA 299


30447R-2.IR_full       301 GCAAATACCGGAATATACAGAATGAGTCCCGGATAGGAATCATTAAAGAGGTGGAGGAAA 359
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30447R-2.in silico     301 GCAAATACCGGAATATACAGAATGAGTCCCGGATAGGAATCATTAAAGAGGTGGAGGAAA 359


30447R-2.IR_full       361 CACAAATGCCAGAAACCACATATAAGAAGAAATCGCCTACGAAACCAGTTATGCGAACAT 419
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30447R-2.in silico     361 CACAAATGCCAGAAACCACATATAAGAAGAAATCGCCTACGAAACCAGTTATGCGAACAT 419


30447R-2.IR_full       421 TCTACTTCTCGGAGCCTATACCGCTAATGCAACATAATTCAAAGCGCAATTTTGTATTTT 479
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30447R-2.in silico     421 TCTACTTCTCGGAGCCTATACCGCTAATGCAACATAATTCAAAGCGCAATTTTGTATTTT 479


30447R-2.IR_full       481 CCGACCCAATTCCTCTGGA 498
                           |||||||||||||||||||
30447R-2.in silico     481 CCGACCCAATTCCTCTGGA 498

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   478  NM_166377.1  CG30447-RA (CG30447), mRNA 
0   10  NM_132908.2  CG4453-RA (Nup153), mRNA 
0   NM_140954.2  CG5618-RA, transcript variant A (CG5618), mRNA 
0   NM_206402.1  CG5618-RB, transcript variant B (CG5618), mRNA 
0   NM_176370.1  CG16993-RA (in), mRNA 
0   NM_058151.4  CG6551-RA (fu), mRNA 
0   NM_057470.3  CG9191-RA (Klp61F), mRNA 
0   NM_137111.1  CG12505-RA (CG12505), mRNA 
0   NM_143288.2  CG31064-RE, transcript variant E (CG31064), mRNA 
0   NM_166546.2  CG30092-RD, transcript variant D (jbug), mRNA 
0   NM_135804.2  CG7099-RA (CG7099), mRNA 
0   NM_140911.2  CG7433-RA, transcript variant A (CG7433), mRNA 
0   NM_168829.1  CG7433-RB, transcript variant B (CG7433), mRNA 
0   NM_169467.1  CG5887-RD, transcript variant D (desat1), mRNA 
0   NM_169465.1  CG5887-RB, transcript variant B (desat1), mRNA 
0   NM_169468.1  CG5887-RE, transcript variant E (desat1), mRNA 
0   NM_169466.1  CG5887-RC, transcript variant C (desat1), mRNA 
0   NM_144474.1  CG5887-RA, transcript variant A (desat1), mRNA 
0   NM_001015131.1  CG40221-PA.3 (CG40221), mRNA 
0   NM_135241.1  CG9211-RA (iHog), mRNA 
0   NM_001015255.1  CG17163-PA.3 (CG17163), mRNA 
0   NM_140259.1  CG5917-RA (CG5917), mRNA 
0   NM_136156.1  CG10463-RA (CG10463), mRNA 
0   NM_138194.2  CG17090-RA, transcript variant A (CG17090), mRNA 
0   NM_167834.1  CG17090-RB, transcript variant B (CG17090), mRNA 
0   NM_001038854.1  CG3845-RC, transcript variant C (l(2)01424), mRNA 
0   NM_165961.1  CG3845-RA, transcript variant A (l(2)01424), mRNA 
0   NM_135239.1  CG18304-RA (CG18304), mRNA 
0   NM_139532.1  CG14967-RA (CG14967), mRNA 
0   NM_143493.2  CG31040-RA (Cog7), mRNA 

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