Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
discarded
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
30289R-1 |
Symbol |
CG30289 |
Full Name |
CG30289 |
CG No |
CG30289 |
Old CG No |
CG30289 |
Synonyms |
CG30289 |
Accession No (Link to NCBI) |
NM_166459.1 |
Inserted Chr. |
ll |
Insertional Mutation |
lethal |
Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGCCTGCTGGTTGAGAATTGTG |
Primer Seq. 3' |
aatctagaggtaccCAGTAGGATCCGACTGAATTG |
Predicted Fragment Size |
485 |
IR fragment full Seq |
0001 GCCTGCTGGT TGAGAATTGT GGAATATCAA AGGACGATCC ATACGTTCCG AACATTATTG
0061 GAGGAGCCAA AACAAATATT CAAGAAAATC CTTGGATGGT GTTGGTTTGG TCGAGTAAGC
0121 CCTGCGGCGG CTCTCTTATT GCACGGCAAT TCGTCCTGAC ANGCANGCGC ACTGCGTATC
0181 CTTTGAAGAT CTGTATGTGC GCTTGGGTGA TTACGAAACA CTAGATCCCA TGCCATACTG
0241 CCTTAACAAT CACTGTATAC CAAAGTTCTA CAACATTAGT GTCGATATGA AAATTGTTCA
0301 CGAAAATTAT AGTGGCACCA CTCTTCAGAA TGATATAGCA TTGCTTCGTA TGTCCGAAGC
0361 TGTGGAGTAC TCAGATTATG TTAGGCCAAT TTGCCTTCTT GTCGGCGAGC AAATGCAAAG
0421 CACTCCAATG TTTACGGTTA CCGGCTGGGG TGAAACAGAA TATGGTCAAT TCAGTCGGAT
0481 CCTACTG |
in silico PCR Fragment |
0001 GCCTGCTGGT TGAGAATTGT GGAATATCAA AGGACGATCC ATACGTTCCG AACATTTTTG
0061 GAGGAGCCAA AACAAATATT CAAGAAAATC CTTGGATGGT GTTGGTTTGG TCGAGTAAGC
0121 CCTGCGGCGG CTCTCTTATT GCACGGCAAT TCGTCCTGAC A-GCA-GCGC ACTGCGTATC
0181 CTTTGAAGAT CTGTATGTGC GCTTGGGTGA TTACGAAACA CTAGATCCCA TGCCATACTG
0241 CCTTAACAAT CACTGTATAC CAAAGTTCTA CAACATTAGT GTGGATATGA AAATTGTTCA
0301 CGAAAATTAT AATGGCATCA CTCTCCAGAA TGATATAGCA TTGCTTCGTA TGTCCGAAGC
0361 TGTGGAGTAC TCAGATTATG TTAGGCCAAT TTGCCTTCTT GTCGGCGAGC AAATGCAAAG
0421 CATTCCAATG TTTACGGTTA CCGGCTGGGG TGAAACAGAA TATGGTCAAT TCAGTCGGAT
0481 CCTACTG |
Assemble Data |
30289R-1.IR_full 1 GCCTGCTGGTTGAGAATTGTGGAATATCAAAGGACGATCCATACGTTCCGAACATTATTG 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
30289R-1.in silico 1 GCCTGCTGGTTGAGAATTGTGGAATATCAAAGGACGATCCATACGTTCCGAACATTTTTG 60
30289R-1.IR_full 61 GAGGAGCCAAAACAAATATTCAAGAAAATCCTTGGATGGTGTTGGTTTGGTCGAGTAAGC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30289R-1.in silico 61 GAGGAGCCAAAACAAATATTCAAGAAAATCCTTGGATGGTGTTGGTTTGGTCGAGTAAGC 120
30289R-1.IR_full 121 CCTGCGGCGGCTCTCTTATTGCACGGCAATTCGTCCTGACANGCANGCGCACTGCGTATC 180
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
30289R-1.in silico 121 CCTGCGGCGGCTCTCTTATTGCACGGCAATTCGTCCTGACA-GCA-GCGCACTGCGTATC 180
30289R-1.IR_full 181 CTTTGAAGATCTGTATGTGCGCTTGGGTGATTACGAAACACTAGATCCCATGCCATACTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30289R-1.in silico 181 CTTTGAAGATCTGTATGTGCGCTTGGGTGATTACGAAACACTAGATCCCATGCCATACTG 240
30289R-1.IR_full 241 CCTTAACAATCACTGTATACCAAAGTTCTACAACATTAGTGTCGATATGAAAATTGTTCA 300
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
30289R-1.in silico 241 CCTTAACAATCACTGTATACCAAAGTTCTACAACATTAGTGTGGATATGAAAATTGTTCA 300
30289R-1.IR_full 301 CGAAAATTATAGTGGCACCACTCTTCAGAATGATATAGCATTGCTTCGTATGTCCGAAGC 360
||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||
30289R-1.in silico 301 CGAAAATTATAATGGCATCACTCTCCAGAATGATATAGCATTGCTTCGTATGTCCGAAGC 360
30289R-1.IR_full 361 TGTGGAGTACTCAGATTATGTTAGGCCAATTTGCCTTCTTGTCGGCGAGCAAATGCAAAG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30289R-1.in silico 361 TGTGGAGTACTCAGATTATGTTAGGCCAATTTGCCTTCTTGTCGGCGAGCAAATGCAAAG 420
30289R-1.IR_full 421 CACTCCAATGTTTACGGTTACCGGCTGGGGTGAAACAGAATATGGTCAATTCAGTCGGAT 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30289R-1.in silico 421 CATTCCAATGTTTACGGTTACCGGCTGGGGTGAAACAGAATATGGTCAATTCAGTCGGAT 480
30289R-1.IR_full 481 CCTACTG 487
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30289R-1.in silico 481 CCTACTG 487
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
467 |
0 |
1 |
1 |
NM_166459.1 |
CG30289-RA (CG30289), mRNA |
0 |
0 |
6 |
3 |
2 |
NM_169517.1 |
CG8870-RA (CG8870), mRNA |
0 |
0 |
4 |
4 |
2 |
NM_169258.1 |
CG9755-RA, transcript variant A (pum), mRNA |
0 |
0 |
4 |
4 |
2 |
NM_169259.1 |
CG9755-RD, transcript variant D (pum), mRNA |
0 |
0 |
4 |
4 |
2 |
NM_079561.2 |
CG9755-RC, transcript variant C (pum), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_165262.2 |
CG31753-RA (ham), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_166461.1 |
CG30287-RA (CG30287), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_142106.1 |
CG14843-RA (CG14843), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_166458.1 |
CG30288-RA (CG30288), mRNA |
0 |
0 |
1 |
5 |
3 |
NM_141016.1 |
CG10587-RA (CG10587), mRNA |
0 |
0 |
1 |
4 |
4 |
NM_142094.1 |
CG14839-RA (CG14839), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_078967.2 |
CG12387-RA (zetaTry), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_137665.1 |
CG30152-RA (CG30152), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_079204.1 |
CG7525-RA (Tie), mRNA |
0 |
0 |
0 |
7 |
5 |
NM_142343.2 |
CG17475-RA (CG17475), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_001038880.1 |
CG3204-RB, transcript variant B (Rap2l), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_057836.3 |
CG3730-RA, transcript variant A (csul), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_166158.1 |
CG3730-RB, transcript variant B (csul), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_169748.1 |
CG31269-RA (CG31269), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_130564.2 |
CG14780-RA (CG14780), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_166886.1 |
CG32808-RA (CG32808), mRNA |
0 |
0 |
0 |
4 |
9 |
NM_001031867.1 |
CG33950-RF, transcript variant F (trol), mRNA |
0 |
0 |
0 |
4 |
9 |
NM_001031863.1 |
CG33950-RD, transcript variant D (trol), mRNA |
0 |
0 |
0 |
4 |
8 |
NM_001031862.1 |
CG33950-RC, transcript variant C (trol), mRNA |
0 |
0 |
0 |
4 |
8 |
NM_001031864.1 |
CG33950-RE, transcript variant E (trol), mRNA |
0 |
0 |
0 |
4 |
8 |
NM_001031866.1 |
CG33950-RA, transcript variant A (trol), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_057398.3 |
CG8049-RA, transcript variant A (Btk29A), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_164805.1 |
CG8049-RC, transcript variant C (Btk29A), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_164804.1 |
CG8049-RD, transcript variant D (Btk29A), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_057397.3 |
CG8049-RB, transcript variant B (Btk29A), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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++ |
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DM |
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+ |
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VM |
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+ |
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VB |
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+ |
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