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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 30075R-3 
 Symbol CG30075  Full Name CG30075 
 CG No CG30075  Old CG No CG30075 
 Synonyms CG30075 
 Accession No (Link to NCBI) NM_166054.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATCACTAAGCTCCGATGAGCA 
 Primer Seq. 3'
aatctagaggtaccGCTGAGAAAGCATCTGATTGG 
 Predicted Fragment Size
488 
 IR fragment full Seq
0001 NTCACTAAGC TCCGATGAGC AGGACGACAT ATTTTTCCTG ATCTATCGGA AGGCACATAC 
0061 TTTGTTNCCA GGCAGGAAAG TTATGGATGA GGCGTATGCG TTATCACGAT GCACAAAGGG 
0121 CATTTGAGAA AGCGATAACA CGCTTGAAAA CTTGCAAAAC TAGCAGTTTC GAACAGCAGT 
0181 GCCGTAAAAA AGATATGCTT ATCGCCCTTT TCGAAAGCTT GATGATCTGC TTCAACAAGA 
0241 TGAGGCAGTC CAGGTGCGTC TGCTATGTCA TGAAGGAACT TCGTCTCCTG ACCATCAATA 
0301 ATCCTTCGGC TTTGGCGCTC TGTNCAGCAC GGTCGTGCCC TAAGCGACTT GGGTAAATAC 
0361 CATCCATCCC GTTTGTGCTA CATAAAGGCG TTGAAAAAAC GTCCTAGAGA CCAGGGTATC 
0421 AAGGATAAGA TTACCAGAAT CAGCAAGAGA ATCACAGAAC TTGAGGATAC CAATCAGATG 
0481 CTTTCTCAGC  
 in silico PCR Fragment
0001 ATCACTAAGC TCCGATGAGC AGGACGACAT ATTTTTCCTG ATCTATCGGA AGGCACATAC 
0061 TTTGTT-CCA GGCAGGAAAG TTATGGATGA GGCGTATGCG TTATCACGAT GCACAAAGGG 
0121 CATTTGAGAA AGCGATAACA CGCTTGAAAA CTTGCAAAAC TAGCAGTTTC GAACAGCAGT 
0181 GCCGTAAAAA AGATATGCTT ATCGCCCTTT TCGAAAGCTT GATGATCTGC TTCAACAAGA 
0241 TGAGGCAGTC CAGGTGCGTC TGCTATGTCA TGAAGGAACT TCGTCTCCTG ACCATCAATA 
0301 ATCCTTCGGC TTTGGCGCTC TGT-CAGCAC GGTCGTGCCC TAAGCGACTT GGGTAAATAC 
0361 CATCCATCCC GTTTGTGCTA CATAAAGGCG TTGAAAAAAC GTCCTAGAGA CCAGGGTATC 
0421 AAGGATAAGA TTACCAGAAT CAGCAAGAGA ATCACAGAAC TTGAGGATAC CAATCAGATG 
0481 CTTTCTCAGC  
 Assemble Data

30075R-3.IR_full        1   TCACTAAGCTCCGATGAGCAGGACGACATATTTTTCCTGATCTATCGGAAGGCACATAC 59
                            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30075R-3.in silico      1   TCACTAAGCTCCGATGAGCAGGACGACATATTTTTCCTGATCTATCGGAAGGCACATAC 59


30075R-3.IR_full       61  TTTGTTNCCAGGCAGGAAAGTTATGGATGAGGCGTATGCGTTATCACGATGCACAAAGGG 119
                           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
30075R-3.in silico     61  TTTGTT-CCAGGCAGGAAAGTTATGGATGAGGCGTATGCGTTATCACGATGCACAAAGGG 119


30075R-3.IR_full       121 CATTTGAGAAAGCGATAACACGCTTGAAAACTTGCAAAACTAGCAGTTTCGAACAGCAGT 179
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30075R-3.in silico     121 CATTTGAGAAAGCGATAACACGCTTGAAAACTTGCAAAACTAGCAGTTTCGAACAGCAGT 179


30075R-3.IR_full       181 GCCGTAAAAAAGATATGCTTATCGCCCTTTTCGAAAGCTTGATGATCTGCTTCAACAAGA 239
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30075R-3.in silico     181 GCCGTAAAAAAGATATGCTTATCGCCCTTTTCGAAAGCTTGATGATCTGCTTCAACAAGA 239


30075R-3.IR_full       241 TGAGGCAGTCCAGGTGCGTCTGCTATGTCATGAAGGAACTTCGTCTCCTGACCATCAATA 299
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30075R-3.in silico     241 TGAGGCAGTCCAGGTGCGTCTGCTATGTCATGAAGGAACTTCGTCTCCTGACCATCAATA 299


30075R-3.IR_full       301 ATCCTTCGGCTTTGGCGCTCTGTNCAGCACGGTCGTGCCCTAAGCGACTTGGGTAAATAC 359
                           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
30075R-3.in silico     301 ATCCTTCGGCTTTGGCGCTCTGT-CAGCACGGTCGTGCCCTAAGCGACTTGGGTAAATAC 359


30075R-3.IR_full       361 CATCCATCCCGTTTGTGCTACATAAAGGCGTTGAAAAAACGTCCTAGAGACCAGGGTATC 419
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30075R-3.in silico     361 CATCCATCCCGTTTGTGCTACATAAAGGCGTTGAAAAAACGTCCTAGAGACCAGGGTATC 419


30075R-3.IR_full       421 AAGGATAAGATTACCAGAATCAGCAAGAGAATCACAGAACTTGAGGATACCAATCAGATG 479
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30075R-3.in silico     421 AAGGATAAGATTACCAGAATCAGCAAGAGAATCACAGAACTTGAGGATACCAATCAGATG 479


30075R-3.IR_full       481 CTTTCTCAGC 489
                           ||||||||||
30075R-3.in silico     481 CTTTCTCAGC 489

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   470  NM_166054.1  CG30075-RA (CG30075), mRNA 
0   NM_142538.1  CG5237-RA (CG5237), mRNA 
0   NM_134844.2  CG9964-RA (Cyp309a1), mRNA 
0   NM_079998.2  CG5912-RA (arr), mRNA 
0   NM_136134.4  CG10186-RA, transcript variant A (CG10186), mRNA 
0   NM_165306.1  CG10186-RC, transcript variant C (CG10186), mRNA 
0   NM_165345.1  CG9331-RA, transcript variant A (CG9331), mRNA 
0   NM_136218.2  CG9331-RB, transcript variant B (CG9331), mRNA 
0   NM_206015.1  CG9331-RE, transcript variant E (CG9331), mRNA 
0   NM_176067.1  CG9331-RD, transcript variant D (CG9331), mRNA 
0   NM_176066.2  CG9331-RC, transcript variant C (CG9331), mRNA 
0   NM_136570.2  CG8266-RA, transcript variant A (sec31), mRNA 
0   NM_165630.1  CG8266-RB, transcript variant B (sec31), mRNA 
0   NM_170416.1  CG1906-RA, transcript variant A (CG1906), mRNA 
0   NM_170419.1  CG1906-RB, transcript variant B (CG1906), mRNA 
0   NM_143444.2  CG1906-RE, transcript variant E (CG1906), mRNA 
0   NM_169206.1  CG9656-RA (grn), mRNA 
0   NM_138189.2  CG6905-RA (CG6905), mRNA 
0   12  NM_139708.1  CG4835-RA (CG4835), mRNA 
0   NM_078559.2  CG18085-RA (sev), mRNA 
0   NM_080280.2  CG32490-RE, transcript variant E (cpx), mRNA 
0   NM_170348.1  CG31055-RB, transcript variant B (CG31055), mRNA 
0   NM_170346.1  CG31055-RA, transcript variant A (CG31055), mRNA 
0   NM_170347.1  CG31055-RC, transcript variant C (CG31055), mRNA 
0   11  NM_132591.3  CG17762-RB, transcript variant B (tomosyn), mRNA 
0   11  NM_167328.2  CG17762-RA, transcript variant A (tomosyn), mRNA 
0   11  NM_167329.2  CG17762-RC, transcript variant C (tomosyn), mRNA 
0   11  NM_167330.2  CG17762-RD, transcript variant D (tomosyn), mRNA 
0   NM_140320.1  CG10663-RA (CG10663), mRNA 
0   NM_136499.2  CG8722-RA, transcript variant A (Nup44A), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
 
DB
DC
DM
++ 
VM
VB
 
Dcompartment   Penetrance
     

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