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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 30039R-3 
 Symbol CG30039  Full Name CG30039 
 CG No CG30039  Old CG No CG30039 
 Synonyms NEST:bs25c07, NEST:bs15e10, BcDNA:AT09538, CG30039 
 Accession No (Link to NCBI) NM_165862.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgAAGTGTAGAAACACAAGCCGC 
 Primer Seq. 3'
aatctagaggtaccTTCGAACGCTTCATAGGTTGC 
 Predicted Fragment Size
405 
 IR fragment full Seq
0001 AAGTGTAGAA ACACAAGCCG CAACTGATGA AGGAGGTCCT CCATTACCGC AATCACCTGA 
0061 AAACGTTGAG GAAAATGTGA AAGAAACCAA AGAGGTTCAA GAGTCCCAGC GCTGCAGTAG 
0121 TTCGAGGATT TTAAATCGGG AACATAAATA TAAGCAGCCA GAATGCAAAG CATCGAGATC 
0181 AGTGAAAAAA AGGAAAAGGG CAAGGATCCA TAAACGGAAA AGCACTCTTT ACGGAGATCG 
0241 CGCTGTGAAC TGTACCAAGT GCGGAACTGT CACGATCTAT TTTCCGGCCC GCACCAAGTT 
0301 TTTCTCATGT GCCGAGATAG ATGGTCGATT GTTCAAGGTG AAACGGATCT CGTCCAGAAA 
0361 AGTACTTGGT GGTgNTTACC GCAAGCAACC TATGAAGCGT TCGAA 
 in silico PCR Fragment
0001 AAGTGTAGAA ACACAAGCCG CAACTGATGA AGGAGGTCCT CCATTACCGC AATCACCTGA 
0061 AAACGTTGAG GAAAATGTGA AAGAAACCAA AGAGGTTCAA GAGTCCCAGC GCTGCAGTAG 
0121 TTCGAGGATT TTAAATCGGG AACATAAATA TAAGCAGCCA GAATGCAAAG CATCGAGATC 
0181 AGTGAAAAAA AGGAAAAGGG CAAGGATCCA TAAACGGAAA AGCACTCTTT ACGGAGATCG 
0241 CGCTGTGAAC TGTACCAAGT GCGGAACTGT CACGATCTAT TTTCCGGCCC GCACCAAGTT 
0301 TTTCTCATGT GCCGAGATAG ATGGTCGATT GTTCAAGGTG AAACGGATCT CGTCCAGAAA 
0361 AGTACTTGGT GGTGCTTACC GCAAGCAACC TATGAAGCGT TCGAA 
 Assemble Data

30039R-3.IR_full       1   AAGTGTAGAAACACAAGCCGCAACTGATGAAGGAGGTCCTCCATTACCGCAATCACCTGA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30039R-3.in silico     1   AAGTGTAGAAACACAAGCCGCAACTGATGAAGGAGGTCCTCCATTACCGCAATCACCTGA 60


30039R-3.IR_full       61  AAACGTTGAGGAAAATGTGAAAGAAACCAAAGAGGTTCAAGAGTCCCAGCGCTGCAGTAG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30039R-3.in silico     61  AAACGTTGAGGAAAATGTGAAAGAAACCAAAGAGGTTCAAGAGTCCCAGCGCTGCAGTAG 120


30039R-3.IR_full       121 TTCGAGGATTTTAAATCGGGAACATAAATATAAGCAGCCAGAATGCAAAGCATCGAGATC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30039R-3.in silico     121 TTCGAGGATTTTAAATCGGGAACATAAATATAAGCAGCCAGAATGCAAAGCATCGAGATC 180


30039R-3.IR_full       181 AGTGAAAAAAAGGAAAAGGGCAAGGATCCATAAACGGAAAAGCACTCTTTACGGAGATCG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30039R-3.in silico     181 AGTGAAAAAAAGGAAAAGGGCAAGGATCCATAAACGGAAAAGCACTCTTTACGGAGATCG 240


30039R-3.IR_full       241 CGCTGTGAACTGTACCAAGTGCGGAACTGTCACGATCTATTTTCCGGCCCGCACCAAGTT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30039R-3.in silico     241 CGCTGTGAACTGTACCAAGTGCGGAACTGTCACGATCTATTTTCCGGCCCGCACCAAGTT 300


30039R-3.IR_full       301 TTTCTCATGTGCCGAGATAGATGGTCGATTGTTCAAGGTGAAACGGATCTCGTCCAGAAA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
30039R-3.in silico     301 TTTCTCATGTGCCGAGATAGATGGTCGATTGTTCAAGGTGAAACGGATCTCGTCCAGAAA 360


30039R-3.IR_full       361 AGTACTTGGTGGTGNTTACCGCAAGCAACCTATGAAGCGTTCGAA 405
                           |||||||||||||| ||||||||||||||||||||||||||||||
30039R-3.in silico     361 AGTACTTGGTGGTGCTTACCGCAAGCAACCTATGAAGCGTTCGAA 405

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   387  NM_165862.1  CG30039-RA (CG30039), mRNA 
0.25   NM_142676.2  CG11622-RA (Rlip), mRNA 
0   14  NM_164380.1  CG31921-RA (CG31921), mRNA 
0   NM_167193.1  CG32702-RA (CG32702), mRNA 
0   NM_140716.1  CG6445-RA, transcript variant A (Cad74A), mRNA 
0   NM_168724.1  CG6445-RB, transcript variant B (Cad74A), mRNA 
0   NM_141737.2  CG6293-RA (CG6293), mRNA 
0   NM_169458.1  CG11502-RA, transcript variant A (svp), mRNA 
0   NM_079601.2  CG11502-RB, transcript variant B (svp), mRNA 
0   NM_140157.2  CG14149-RA (CG14149), mRNA 
0   NM_137711.3  CG30389-RA, transcript variant A (CG30389), mRNA 
0   NM_137712.3  CG30389-RC, transcript variant C (CG30389), mRNA 
0   NM_166428.2  CG30389-RB, transcript variant B (CG30389), mRNA 
0   NM_132608.2  CG32649-RA (CG32649), mRNA 
0   NM_141335.1  CG11000-RA (CG11000), mRNA 
0   NM_135908.2  CG18482-RA (CG18482), mRNA 
0   NM_078922.2  CG4486-RA (Cyp9b2), mRNA 
0   NM_176125.2  CG2204-RE, transcript variant E (G-oalpha47A), mRNA 
0   NM_168171.1  CG32397-RA (CG32397), mRNA 
0   24  NM_164808.2  CG31901-RA (CG31901), mRNA 
0   23  NR_002068.3  CG31901-RA (CG31901), mRNA, miscRNA 
0   NM_079522.2  CG10281-RA (TfIIFalpha), mRNA 
0   NM_167356.1  CG1770-RB, transcript variant B (HDAC4), mRNA 
0   NM_140901.2  CG7762-RA (Rpn1), mRNA 
0   NM_135019.1  CG15627-RA (CG15627), mRNA 
0   NR_002104.1  CG15627-RA (CG15627), mRNA, miscRNA 
0   NM_168424.1  CG6404-RA, transcript variant A (CG6404), mRNA 
0   NM_140160.3  CG6404-RB, transcript variant B (CG6404), mRNA 
0   NM_170158.1  CG5794-RB, transcript variant B (CG5794), mRNA 
0   NM_143018.2  CG5794-RD, transcript variant D (CG5794), mRNA 

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