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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 18495R-3 
 Symbol Prosalpha6  Full Name Proteasome alpha6 subunit 
 CG No CG18495  Old CG No CG18495 
 Synonyms CG18495, Prosalpha1, Prosalpha6 
 Accession No (Link to NCBI)  
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]

Yano H, Yamamoto-Hino M, Awano W, Aoki-Kinoshita KF, Tsuda-Sakurai K, Okano H, Goto S.
Identification of proteasome components required for apical localization of Chaoptin using functional genomics.
J Neurogenet (2012) 26(1) 53-63 [ PubMed ID = 22417167 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATGTCTCGCGGAAGTTCAGCC 
 Primer Seq. 3'
aatctagaggtaccTGCAGGCCTTGAACCCGCTGA 
 Predicted Fragment Size
499 
 IR fragment full Seq
 
 in silico PCR Fragment
 
 Assemble Data

18495R-3.IR full       1   ATGTCTCGCGGAAGTTCAGCCGGCTTTGACAGACACATCACGATCTTCTCTCCGGAGGGA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18495R-3.in silico     1   ATGTCTCGCGGAAGTTCAGCCGGCTTTGACAGACACATCACGATCTTCTCTCCGGAGGGA 60


18495R-3.IR full       61  CGCCTCTACCAAGTGGAGTACGCCTTCAAGGCTATTGCCCAGGAGAACATCACCACGGTG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18495R-3.in silico     61  CGCCTCTACCAAGTGGAGTACGCCTTCAAGGCTATTGCCCAGGAGAACATCACCACGGTG 120


18495R-3.IR full       121 GCGCTGAAGAGTGGCGACTGTGCCGTGGTGGCCACCCAAAAAAAAGTGACCGAGAAGAAC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18495R-3.in silico     121 GCGCTGAAGAGTGGCGACTGTGCCGTGGTGGCCACCCAAAAAAAAGTGACCGAGAAGAAC 180


18495R-3.IR full       181 ATCGTGCCTGAAACGGTGACCCACCTGTTCCGCATCACCAAGGACATTGGATGCGCAATG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18495R-3.in silico     181 ATCGTGCCTGAAACGGTGACCCACCTGTTCCGCATCACCAAGGACATTGGATGCGCAATG 240


18495R-3.IR full       241 ACCGGACGCATAGCTGATTCCCGCTCACAGGTGCAGAAGGCCAGATACGAGGCCGCCAAC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18495R-3.in silico     241 ACCGGACGCATAGCTGATTCCCGCTCACAGGTGCAGAAGGCCAGATACGAGGCCGCCAAC 300


18495R-3.IR full       301 TTCCGCTACAAGTACGGCTACGAAATGCCCGTGGATGTGCTGTGTCGTCGAATTGCGGAT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18495R-3.in silico     301 TTCCGCTACAAGTACGGCTACGAAATGCCCGTGGATGTGCTGTGTCGTCGAATTGCGGAT 360


18495R-3.IR full       361 ATCAACCAGGTGTACACGCAGAATGCCGAGATNCGTCCGCTCGGCTGCANCATGGTGCTG 420
                           |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
18495R-3.in silico     361 ATCAACCAGGTGTACACGCAGAATGCCGAGATGCGTCCGCTCGGCTGCAGCATGGTGCTG 420


18495R-3.IR full       421 ATCGCTTACGACAATGAAATCGGACCCAGCGTTTACAAGACGGACCCAGCTGGCTACTTC 480
                           ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
18495R-3.in silico     421 ATCGCTTACGACAATGAAATCGGCCCCAGCGTTTACAAGACGGACCCGGCTGGCTACTTC 480


18495R-3.IR full       481 AGCGGGTTCAAGGCCTGCA 499
                           |||||||||||||||||||
18495R-3.in silico     481 AGCGGGTTCAAGGCCTGCA 499

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
++ 
DB
++ 
DC
++ 
DM
++ 
VM
VB
 
Caspase-3 signal
N
DB
DC
DM
++ 
VM
++ 
VB
++ 
Dcompartment   Penetrance
++     

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