National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 17991R-1 
 Symbol CG17991  Full Name CG17991 
 CG No CG17991  Old CG No CG17991 
 Synonyms CG17991 
 Accession No (Link to NCBI) NM_143290.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTTCAGCTGGAGGAGATTCGAC 
 Primer Seq. 3'
aatctagaggtaccGGGCATCTTCCCAGGGAATTA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TTCAGCTGGA GGAGATTCGA CGGAACTGGA GCGCTGTTGC TGGATCTGTT TTGAGACCGA 
0061 TAAGGAGGCA GGTCGCCAGG CTTGGGTGAA TCCATGTCTC CGCCGAGGAA CCAATAAGTG 
0121 GGGTGCACCA GAGCTGCATT TCCCTCTGGA TCGACGAGAA GACCCGAATA AACAACAATC 
0181 TGCAAGCCGT TTCCTGTCCA CAATGCCAAA CGGAGTACAC CATTGCATAC CCGAATCTCT 
0241 GGATTTTCGA TAGGGCTTTG GAGCTGACCA ACGATCTTAT CCTAACAAAC TTATATAATT 
0301 GCCTGGCCAA TGTCTTCACT GTGGTCTTTG CCTATTGGTC AGCGGTTTCA TTCGGAGCAA 
0361 AAACATATTT GCAGATCACT GGTCAGGAAG GTCACGTTCA TCAAATAATT CAATCGGGAG 
0421 ACCTGTTGGT TGTTCTGGTC GGATTCCCAT TAATCTCGGT AGTTCTGATA CTTGGACGCT 
0481 TAATTCCCTG GGAAGATGCC C 
 in silico PCR Fragment
0001 TTCAGCTGGA GGAGATTCGA CGGAACTGGA GCGCTGTTGC TGGATCTGTT TTGAGACCGA 
0061 TAAGGAGGCA GGTCGCCAGG CTTGGGTGAA TCCATGTCTC TGCCGAGGAA CCAATAAGT- 
0121 GGGTGCACCA GAGCTGCATT TCCCTCTGGA TCGACGAGAA GACCCGAATA AACAACAATC 
0181 TGCAAGCCGT TTCCTGTCCA CAATGCCAAA CGGAGTACAC CATTGCATAC CCGAATCTCT 
0241 GGATTTTCGA TAGGGCTTTG GAGCTGACCA ACGATCTTAT CCTAACAAAC TTATATAATT 
0301 GCCTGGCCAA TGTCTTCACG GTGGTCTTTG CCTATTGGTC AGCGGTTTCA TTCGGAGCAA 
0361 AAACATATTT GCAGATCACT GGTCAGGAAG GTCACGTTCA TCAAATAATT CAATCGGGAG 
0421 ACCTGTTGGT TGTTCTGGTC GGATTCCCAT TAATCTCGGT AGTTCTGATA CTTGGACGCT 
0481 TAATTCCCTG GGAAGATGCC C 
 Assemble Data

17991R-1.IR_full       1   TTCAGCTGGAGGAGATTCGACGGAACTGGAGCGCTGTTGCTGGATCTGTTTTGAGACCGA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17991R-1.in silico     1   TTCAGCTGGAGGAGATTCGACGGAACTGGAGCGCTGTTGCTGGATCTGTTTTGAGACCGA 60


17991R-1.IR_full       61  TAAGGAGGCAGGTCGCCAGGCTTGGGTGAATCCATGTCTCCGCCGAGGAACCAATAAGTG 120
                           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
17991R-1.in silico     61  TAAGGAGGCAGGTCGCCAGGCTTGGGTGAATCCATGTCTCTGCCGAGGAACCAATAAGT- 120


17991R-1.IR_full       121 GGGTGCACCAGAGCTGCATTTCCCTCTGGATCGACGAGAAGACCCGAATAAACAACAATC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17991R-1.in silico     121 GGGTGCACCAGAGCTGCATTTCCCTCTGGATCGACGAGAAGACCCGAATAAACAACAATC 180


17991R-1.IR_full       181 TGCAAGCCGTTTCCTGTCCACAATGCCAAACGGAGTACACCATTGCATACCCGAATCTCT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17991R-1.in silico     181 TGCAAGCCGTTTCCTGTCCACAATGCCAAACGGAGTACACCATTGCATACCCGAATCTCT 240


17991R-1.IR_full       241 GGATTTTCGATAGGGCTTTGGAGCTGACCAACGATCTTATCCTAACAAACTTATATAATT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17991R-1.in silico     241 GGATTTTCGATAGGGCTTTGGAGCTGACCAACGATCTTATCCTAACAAACTTATATAATT 300


17991R-1.IR_full       301 GCCTGGCCAATGTCTTCACTGTGGTCTTTGCCTATTGGTCAGCGGTTTCATTCGGAGCAA 360
                           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
17991R-1.in silico     301 GCCTGGCCAATGTCTTCACGGTGGTCTTTGCCTATTGGTCAGCGGTTTCATTCGGAGCAA 360


17991R-1.IR_full       361 AAACATATTTGCAGATCACTGGTCAGGAAGGTCACGTTCATCAAATAATTCAATCGGGAG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17991R-1.in silico     361 AAACATATTTGCAGATCACTGGTCAGGAAGGTCACGTTCATCAAATAATTCAATCGGGAG 420


17991R-1.IR_full       421 ACCTGTTGGTTGTTCTGGTCGGATTCCCATTAATCTCGGTAGTTCTGATACTTGGACGCT 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17991R-1.in silico     421 ACCTGTTGGTTGTTCTGGTCGGATTCCCATTAATCTCGGTAGTTCTGATACTTGGACGCT 480


17991R-1.IR_full       481 TAATTCCCTGGGAAGATGCCC 501
                           |||||||||||||||||||||
17991R-1.in silico     481 TAATTCCCTGGGAAGATGCCC 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_143290.1  CG17991-RA (CG17991), mRNA 
0.62   22  21  NM_141206.3  CG9855-RA (CG9855), mRNA 
0   NM_164580.1  CG2969-RB, transcript variant B (Atet), mRNA 
0   NM_078747.2  CG2969-RA, transcript variant A (Atet), mRNA 
0   NM_206495.1  CG4898-RK, transcript variant K (Tm1), mRNA 
0   NM_170496.1  CG31371-RA (CG31371), mRNA 
0   NM_135953.2  CG5968-RA (CG5968), mRNA 
0   NM_079878.3  CG2125-RA (ci), mRNA 
0   NM_080301.2  CG3848-RC, transcript variant C (trr), mRNA 
0   NM_166911.3  CG3848-RD, transcript variant D (trr), mRNA 
0   NM_078500.3  CG4317-RA (Mipp2), mRNA 
0   NM_206294.1  CG33275-RA, transcript variant A (CG33275), mRNA 
0   NM_206295.1  CG33275-RB, transcript variant B (CG33275), mRNA 
0   NM_206293.1  CG33275-RC, transcript variant C (CG33275), mRNA 
0   NM_136619.2  CG30342-RA (CG30342), mRNA 
0   NM_141204.3  CG1084-RA (Cont), mRNA 
0   NM_134648.1  CG13694-RA (CG13694), mRNA 
0   NM_166800.1  CG32016-RE, transcript variant E (CG32016), mRNA 
0   NM_166798.1  CG32016-RC, transcript variant C (CG32016), mRNA 
0   NM_166799.1  CG32016-RD, transcript variant D (CG32016), mRNA 
0   NM_166796.1  CG32016-RA, transcript variant A (CG32016), mRNA 
0   NM_166801.1  CG32016-RF, transcript variant F (CG32016), mRNA 
0   NM_166797.1  CG32016-RB, transcript variant B (CG32016), mRNA 
0   14  NM_132228.2  CG10761-RA (CG10761), mRNA 
0   15  NM_130703.2  CG16781-RA (CG16781), mRNA 
0   25  NM_144448.2  CG1915-RC, transcript variant C (sls), mRNA 
0   NM_136556.2  CG14749-RA (CG14749), mRNA 
0   NM_164860.1  CG4389-RB, transcript variant B (CG4389), mRNA 
0   NM_137707.2  CG30388-RA (Magi), mRNA 
0   NM_176284.1  CG17795-RB, transcript variant B (mthl2), mRNA 

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.