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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 1795R-2 
 Symbol Ogg1  Full Name Ogg1 
 CG No CG1795  Old CG No CG1795 
 Synonyms CG1795, dOGG1, BcDNA:LD19945, Ogg1 
 Accession No (Link to NCBI) NM_132271.3 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgGAAGGCTGTTTTACAGGATCG 
 Primer Seq. 3' 
aatctagaggtaccCGTGGGAAATGTATACGCATC 
 Predicted Fragment Size 
496 
 IR fragment full Seq 
0001 GAAGGCTGTT TTACAGGATC GGGGTGTCAT AGGCTTATCC CTCGAAGAAT GCGATTTGGA 
0061 AAGAACTTTG CTTGGAGGAC AGAGTTTCCG ATGGCGATCC ATATGCGATG GTAATAGAAC 
0121 GAAATATGGC GGAGTGGATG TTCAACACCT ACTGGGTGCT CCAGCAAGAA GAATCCTTCA 
0181 TAACTTACGA GGCATACGGA ACCAGCAGTC CTTTGGCCAC GAAGGACTAT TCTTCCTTGA 
0241 TATCTGACTA CCTACGTGTT GATTTCGACC TAAAGGTCAA CCAAAAAGAT TGGTTAAGCA 
0301 AAGATGATAA CTTTGTGAAG TTCTTGAGTA AGCCTGTGCG CCTCCTTTCT CAGGAGCCGT 
0361 TCGAAAACAT TTTTAGCTTC CTTTGCAGTC AGAACAATAA CATCAAGCGC ATATCATCTA 
0421 TGATTGAATG GTTTTGCGCT ACATTTGGCA CCAAGATTGG TCACTTCAAT GGTGCCGATG 
0481 CGTATACATT TCCCACG 
 in silico PCR Fragment 
0001 GAAGGCTGTT TTACAGGATC GGGGTGTCAT AGGCTTATCC CTCGAAGAAT GCGATTTGGA 
0061 AAGAACTTTG CTTGGAGGAC AGAGTTTCCG ATGGCGATCC ATATGCGATG GTAATAGAAC 
0121 GAAATATGGC GGAGTGG-TG TTCAACACCT ACTGGGTGCT CCAGCAAGAA GAATCCTTCA 
0181 TAACTTACGA GGCATACGGA ACCAGCAGTC CTTTGGCCAC GAAGGACTAT TCTTCCTTGA 
0241 TATCTGACTA CCTACGTGTT GATTTCGACC TAAAGGTCAA CCAAAAAGAT TGGTTAAGCA 
0301 AAGATGATAA CTTTGTGAAG TTCTTGAGTA AGCCTGTGCG CCTCCTTTCT CAGGAGCCGT 
0361 TCGAAAACAT TTTTAGCTTC CTTTGCAGTC AGAACAATAA CATCAAGCGC ATATCATCTA 
0421 TGATTGAATG GTTTTGCGCT ACATTTGGCA CCAAGATTGG TCACTTCAAT GGTGCCGATG 
0481 CGTATACATT TCCCACG 
 Assemble Data 

1795R-2.IR_full       1   GAAGGCTGTTTTACAGGATCGGGGTGTCATAGGCTTATCCCTCGAAGAATGCGATTTGGA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1795R-2.in silico     1   GAAGGCTGTTTTACAGGATCGGGGTGTCATAGGCTTATCCCTCGAAGAATGCGATTTGGA 60


1795R-2.IR_full       61  AAGAACTTTGCTTGGAGGACAGAGTTTCCGATGGCGATCCATATGCGATGGTAATAGAAC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1795R-2.in silico     61  AAGAACTTTGCTTGGAGGACAGAGTTTCCGATGGCGATCCATATGCGATGGTAATAGAAC 120


1795R-2.IR_full       121 GAAATATGGCGGAGTGGATGTTCAACACCTACTGGGTGCTCCAGCAAGAAGAATCCTTCA 180
                          ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
1795R-2.in silico     121 GAAATATGGCGGAGTGG-TGTTCAACACCTACTGGGTGCTCCAGCAAGAAGAATCCTTCA 180


1795R-2.IR_full       181 TAACTTACGAGGCATACGGAACCAGCAGTCCTTTGGCCACGAAGGACTATTCTTCCTTGA 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1795R-2.in silico     181 TAACTTACGAGGCATACGGAACCAGCAGTCCTTTGGCCACGAAGGACTATTCTTCCTTGA 240


1795R-2.IR_full       241 TATCTGACTACCTACGTGTTGATTTCGACCTAAAGGTCAACCAAAAAGATTGGTTAAGCA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1795R-2.in silico     241 TATCTGACTACCTACGTGTTGATTTCGACCTAAAGGTCAACCAAAAAGATTGGTTAAGCA 300


1795R-2.IR_full       301 AAGATGATAACTTTGTGAAGTTCTTGAGTAAGCCTGTGCGCCTCCTTTCTCAGGAGCCGT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1795R-2.in silico     301 AAGATGATAACTTTGTGAAGTTCTTGAGTAAGCCTGTGCGCCTCCTTTCTCAGGAGCCGT 360


1795R-2.IR_full       361 TCGAAAACATTTTTAGCTTCCTTTGCAGTCAGAACAATAACATCAAGCGCATATCATCTA 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1795R-2.in silico     361 TCGAAAACATTTTTAGCTTCCTTTGCAGTCAGAACAATAACATCAAGCGCATATCATCTA 420


1795R-2.IR_full       421 TGATTGAATGGTTTTGCGCTACATTTGGCACCAAGATTGGTCACTTCAATGGTGCCGATG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1795R-2.in silico     421 TGATTGAATGGTTTTGCGCTACATTTGGCACCAAGATTGGTCACTTCAATGGTGCCGATG 480


1795R-2.IR_full       481 CGTATACATTTCCCACG 497
                          |||||||||||||||||
1795R-2.in silico     481 CGTATACATTTCCCACG 497



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   478  0  0  0  NM_132271.3  CG1795-RA (Ogg1), mRNA 
0   0  1  3  4  NM_167516.1  CG4239-RB, transcript variant B (CG4239), mRNA 
0   0  1  3  4  NM_132894.2  CG4239-RC, transcript variant C (CG4239), mRNA 
0   0  1  3  4  NM_167515.1  CG4239-RA, transcript variant A (CG4239), mRNA 
0   0  1  3  2  NM_132260.2  CG12113-RA (l(1)G0095), mRNA 
0   0  1  3  2  NM_141682.2  CG8412-RA (CG8412), mRNA 
0   0  1  3  2  NM_140915.3  CG14183-RA (CG14183), mRNA 
0   0  1  3  2  NM_137544.2  CG15104-RA (Topors), mRNA 
0   0  1  2  7  NM_135073.2  CG17970-RA (Cyp4ac2), mRNA 
0   0  1  2  3  NM_140324.2  CG10646-RA (CG10646), mRNA 
0   0  1  2  2  NM_165144.1  CG4824-RB, transcript variant B (BicC), mRNA 
0   0  1  2  2  NM_057517.2  CG4824-RA, transcript variant A (BicC), mRNA 
0   0  1  2  2  NM_165145.1  CG4824-RD, transcript variant D (BicC), mRNA 
0   0  0  6  4  NM_142054.1  CG14365-RA (CG14365), mRNA 
0   0  0  6  4  NM_144320.2  CG4440-RA (CG4440), mRNA 
0   0  0  5  3  NM_140668.1  CG9669-RA (CG9669), mRNA 
0   0  0  4  5  NM_136375.1  CG3273-RA (sced), mRNA 
0   0  0  4  4  NM_057868.3  CG8759-RB, transcript variant B (Nacalpha), mRNA 
0   0  0  4  4  NM_165950.1  CG8759-RC, transcript variant C (Nacalpha), mRNA 
0   0  0  4  3  NM_166076.1  CG12424-RB, transcript variant B (CG12424), mRNA 
0   0  0  4  3  NM_137165.1  CG12424-RA, transcript variant A (CG12424), mRNA 
0   0  0  4  3  NM_166077.1  CG12424-RC, transcript variant C (CG12424), mRNA 
0   0  0  4  3  NM_057971.4  CG1584-RA (Orc6), mRNA 
0   0  0  4  3  NM_166239.2  CG4878-RA, transcript variant A (eIF3-S9), mRNA 
0   0  0  4  3  NM_140379.1  CG14111-RA (CG14111), mRNA 
0   0  0  4  3  NM_137384.2  CG4878-RB, transcript variant B (eIF3-S9), mRNA 
0   0  0  4  2  NM_142687.1  CG5793-RA (CG5793), mRNA 
0   0  0  3  5  NM_135091.2  CG31989-RA (Cap-D3), mRNA 
0   0  0  3  4  NM_143613.2  CG12063-RA (CG12063), mRNA 
0   0  0  3  4  NM_136344.1  CG14470-RA (CG14470), mRNA 

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