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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 1736R-3 
 Symbol Prosalpha3T  Full Name Prosalpha3T 
 CG No CG1736  Old CG No CG1736 
 Synonyms CG1736, Prosalpha3T 
 Accession No (Link to NCBI)  
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTTCCCGCACCACGATCTTTTC 
 Primer Seq. 3'
aatctagaggtaccTTTCCATGGCTGCCCCTGACT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TTCCCGCACC ACGATCTTTT CACCGGAGGN CCGCCTCTAT CAGGTGGAGT ATGCGATGGA 
0061 GGCCGCTTCG NAGTCGGGCA CATGCGTGGG ACTCCTGGCT AAGAACGGAG TCCTGTTGGC 
0121 CACTGAACGA AGCGTTGACA AGCTCATGGA CACCAGTATT CCTGTGCCAA GAATCTCGTG 
0181 GTTGAACGAG AACATTGCCT GNTGCGCCAC GGGCAACACG GCGGATGGTA ACGTGCTGGT 
0241 TAACCAACTG CGAATGATCG CCCAACAATA TCAGTTCAAC TTCGGTGAGA TGATTCCTTG 
0301 CGAGCAGTTG GTCACGAACC TTTGCGATAT CAAACAGGCG TATACGCAAT ATGGTGGCAA 
0361 ACGACCCTTC GGGGTATCGT TTCTTTACAT GGGCTGGGAT TGCCGCTTCG GGTTTCAGTT 
0421 GTATCAGTCC GATCCCAGTG GAAACTACAG TGGCTGGAAG GCACCTGCAT TGGCCGCAAG 
0481 TCAGGGGCAG CCATGGAAA 
 in silico PCR Fragment
0001 TTCCCGCACC ACGATCTTTT CACCGGAGGG CCGCCTCTAT CAGGTGGAGT ATGCGATGGA 
0061 GGCCGCTTCG CAGTCGGGCA CATGCGTGGG ACTCCTGGCT AAGAACGGAG TCCTGTTGGC 
0121 CACTGAACGA AGCGTTGACA AGCTCATGGA CACCAGTATT CCTGTGCCAA GAATCTCGTG 
0181 GTTGAACGAG AACATTGCCT GTTGCGCCAC GGGCAACACG GCGGATGGTA ACGTGCTGGT 
0241 TAACCAACTG CGAATGATCG CCCAACAATA TCAGTTCAAC TTCGGTGAGA TGATTCCTTG 
0301 CGAGCAGTTG GTCACGAACC TTTGCGATAT CAAACAGGCG TATACGCAAT ATGGTGGCAA 
0361 ACGACCCTTC GGGGTATCGT TTCTTTACAT GGGCTGGGAT TGCCGCTTCG GGTTTCAGTT 
0421 GTATCAGTCC GATCCCAGTG GAAACTACAG TGGCTGGAAG GCCACCTGCA TTGGCCGCAA 
0481 GTCAGGGGCA GCCATGGAAA  
 Assemble Data

1736R-3.IR full       1   TTCCCGCACCACGATCTTTTCACCGGAGGNCCGCCTCTATCAGGTGGAGTATGCGATGGA 60
                          ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
1736R-3.in silico     1   TTCCCGCACCACGATCTTTTCACCGGAGGGCCGCCTCTATCAGGTGGAGTATGCGATGGA 60


1736R-3.IR full       61  GGCCGCTTCGNAGTCGGGCACATGCGTGGGACTCCTGGCTAAGAACGGAGTCCTGTTGGC 120
                          |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
1736R-3.in silico     61  GGCCGCTTCGCAGTCGGGCACATGCGTGGGACTCCTGGCTAAGAACGGAGTCCTGTTGGC 120


1736R-3.IR full       121 CACTGAACGAAGCGTTGACAAGCTCATGGACACCAGTATTCCTGTGCCAAGAATCTCGTG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1736R-3.in silico     121 CACTGAACGAAGCGTTGACAAGCTCATGGACACCAGTATTCCTGTGCCAAGAATCTCGTG 180


1736R-3.IR full       181 GTTGAACGAGAACATTGCCTGNTGCGCCACGGGCAACACGGCGGATGGTAACGTGCTGGT 240
                          ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
1736R-3.in silico     181 GTTGAACGAGAACATTGCCTGTTGCGCCACGGGCAACACGGCGGATGGTAACGTGCTGGT 240


1736R-3.IR full       241 TAACCAACTGCGAATGATCGCCCAACAATATCAGTTCAACTTCGGTGAGATGATTCCTTG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1736R-3.in silico     241 TAACCAACTGCGAATGATCGCCCAACAATATCAGTTCAACTTCGGTGAGATGATTCCTTG 300


1736R-3.IR full       301 CGAGCAGTTGGTCACGAACCTTTGCGATATCAAACAGGCGTATACGCAATATGGTGGCAA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1736R-3.in silico     301 CGAGCAGTTGGTCACGAACCTTTGCGATATCAAACAGGCGTATACGCAATATGGTGGCAA 360


1736R-3.IR full       361 ACGACCCTTCGGGGTATCGTTTCTTTACATGGGCTGGGATTGCCGCTTCGGGTTTCAGTT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1736R-3.in silico     361 ACGACCCTTCGGGGTATCGTTTCTTTACATGGGCTGGGATTGCCGCTTCGGGTTTCAGTT 420


1736R-3.IR full       421 GTATCAGTCCGATCCCAGTGGAAACTACAGTGGCTGGAAGGC-ACCTGCATTGGCCGCAA 480
                          |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
1736R-3.in silico     421 GTATCAGTCCGATCCCAGTGGAAACTACAGTGGCTGGAAGGCCACCTGCATTGGCCGCAA 480


1736R-3.IR full       481 GTCAGGGGCAGCCATGGAAA 500
                          ||||||||||||||||||||
1736R-3.in silico     481 GTCAGGGGCAGCCATGGAAA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 

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