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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 1736R-2 
 Symbol Prosalpha3T  Full Name Prosalpha3T 
 CG No CG1736  Old CG No CG1736 
 Synonyms CG1736, Prosalpha3T 
 Accession No (Link to NCBI)  
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTTCCCGCACCACGATCTTTTC 
 Primer Seq. 3'
aatctagaggtaccTTTCCATGGCTGCCCCTGACT 
 Predicted Fragment Size
500 
 IR fragment full Seq
 
 in silico PCR Fragment
 
 Assemble Data

1736R-2.IR full       1   TTCCCGCACCACGATCTTTTCACCGGAGGNCCGCCTCTATCAGGTGGAGTATGCGATGGA 60
                          ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
1736R-2.in silico     1   TTCCCGCACCACGATCTTTTCACCGGAGGGCCGCCTCTATCAGGTGGAGTATGCGATGGA 60


1736R-2.IR full       61  GGCCGCTTCGNAGTCGGGCACATGCGTGGGACTCCTGGCTAAGAACGGAGTCCTGTTGGC 120
                          |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
1736R-2.in silico     61  GGCCGCTTCGCAGTCGGGCACATGCGTGGGACTCCTGGCTAAGAACGGAGTCCTGTTGGC 120


1736R-2.IR full       121 CACTGAACGAAGCGTTGACAAGCTCATGGACACCAGTATTCCTGTGCCAAGAATCTCGTG 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1736R-2.in silico     121 CACTGAACGAAGCGTTGACAAGCTCATGGACACCAGTATTCCTGTGCCAAGAATCTCGTG 180


1736R-2.IR full       181 GTTGAACGAGAACATTGCCTGNTGCGCCACGGGCAACACGGCGGATGGTAACGTGCTGGT 240
                          ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
1736R-2.in silico     181 GTTGAACGAGAACATTGCCTGTTGCGCCACGGGCAACACGGCGGATGGTAACGTGCTGGT 240


1736R-2.IR full       241 TAACCAACTGCGAATGATCGCCCAACAATATCAGTTCAACTTCGGTGAGATGATTCCTTG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1736R-2.in silico     241 TAACCAACTGCGAATGATCGCCCAACAATATCAGTTCAACTTCGGTGAGATGATTCCTTG 300


1736R-2.IR full       301 CGAGCAGTTGGTCACGAACCTTTGCGATATCAAACAGGCGTATACGCAATATGGTGGCAA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1736R-2.in silico     301 CGAGCAGTTGGTCACGAACCTTTGCGATATCAAACAGGCGTATACGCAATATGGTGGCAA 360


1736R-2.IR full       361 ACGACCCTTCGGGGTATCGTTTCTTTACATGGGCTGGGATTGCCGCTTCGGGTTTCAGTT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1736R-2.in silico     361 ACGACCCTTCGGGGTATCGTTTCTTTACATGGGCTGGGATTGCCGCTTCGGGTTTCAGTT 420


1736R-2.IR full       421 GTATCAGTCCGATCCCAGTGGAAACTACAGTGGCTGGAAGGC-ACCTGCATTGGCCGCAA 480
                          |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
1736R-2.in silico     421 GTATCAGTCCGATCCCAGTGGAAACTACAGTGGCTGGAAGGCCACCTGCATTGGCCGCAA 480


1736R-2.IR full       481 GTCAGGGGCAGCCATGGAAA 500
                          ||||||||||||||||||||
1736R-2.in silico     481 GTCAGGGGCAGCCATGGAAA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 

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