NIG-Fly - Fly Stocks of National Institute of Genetics -

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NIG-RNAi Strains Detail

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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)

Stock ID

16905R-9

Symbol

CG16905

Full Name

CG16905

CG No

CG16905

Old CG No

CG16905

Synonyms

CG16905

Accession No (Link to NCBI)

NM_141699.1

Inserted Chr.

Insertional Mutation

Phenotype induced by Act5C-GAL4 at 28 degrees

viable

Map Viewer

Reference
[Please submit your publication]

Chertemps T, Duportets L, Labeur C, Ueda R, Takahashi K, Saigo K, Wicker-Thomas C.
A female-biased expressed elongase involved in long-chain hydrocarbon biosynthesis and courtship behavior in Drosophila melanogaster.
Proc Natl Acad Sci U S A (2007) 104(11) 4273-8 [ PubMed ID = 17360514 ] [ RRC reference ]

Comment

Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)

Primer Seq. 5'

aaggcctacatggccggaccgTGTTCGCTCCGATAGATCCTG

Primer Seq. 3'

aatctagaggtaccAATCACGTGGACGGCGGTGTT

Predicted Fragment Size

IR fragment full Seq

0001 TGTTCGCTCC GATAGATCCT GTAAAGATAC CCGTTGTAAG CAATCCATGG ATAACCATGG 
0061 GCACATTGAT TGGCTATCTG CTGTTTGTGC TCAAGCTGGG CCCCAAAATC ATGGAGCACC 
0121 GAAAGCCCTT CCATTTGAAT GGCGTCATCA GGATCTACAA CATATTCCAG ATCCTTTACA 
0181 ATGGTCTAAT ACTCGTTTTA GGAGTTCACT TCCTGTTTGT CCTGAAAGCC TACCAAATCA 
0241 GTTGCATTGT TAGCCTGCCG ATGGATCACA AATATAAGGA TAGAGAGCGT TTGATTTGCA 
0301 CTTTGTACCT GGTGAACAAA TTCGTAGACC TTGTGGAAAC CATTTTCTTT GTGCTCCGCA 
0361 AAAAGGACAG ACAGATATCC TTCCTGCACG TCTTCCATCA TTTTGCGATG GCATTTTTTG 
0421 GATATCTCTA CTACTGCTTC CACGGATACG GTGGCGTTGC CTTTCCACAG TGCCTGCTAA 
0481 ACACCGCCGT CCACGTGATT

in silico PCR Fragment

0001 TGTTCGCTCC GATAGATCCT GTAAAGATAC CCGTTGTAAG CAATCCATGG ATAACCATGG 
0061 GCACATTGAT TGGCTATCTG CTGTTTGTGC TCAAGCTGGG CCCCAAAATC ATGGAGCACC 
0121 GAAAGCCCTT CCATTTGAAT GGCGTCATCA GGATCTACAA CATATTCCAG ATCCTTTACA 
0181 ATGGTCTAAT ACTCGTTTTA GGAGTTCACT TCCTGTTTGT CCTGAAAGCC TACCAAATCA 
0241 GTTGCATTGT TAGCCTGCCG ATGGATCACA AATATAAGGA TAGAGAGCGT TTGATTTGCA 
0301 CTTTGTACCT GGTGAACAAA TTCGTAGACC TTGTGGAAAC CATTTTCTTT GTGCTCCGCA 
0361 AAAAGGACAG ACAGATATCC TTCCTGCACG TCTTCCATCA TTTTGCGATG GCATTTTTTG 
0421 GATATCTCTA CTACTGCTTC CACGGATACG GTGGCGTTGC CTTTCCACAG TGCCTGCTAA 
0481 ACACCGCCGT CCACGTGATT

Assemble Data


16905R-9.IR_full       1   TGTTCGCTCCGATAGATCCTGTAAAGATACCCGTTGTAAGCAATCCATGGATAACCATGG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16905R-9.in silico     1   TGTTCGCTCCGATAGATCCTGTAAAGATACCCGTTGTAAGCAATCCATGGATAACCATGG 60


16905R-9.IR_full       61  GCACATTGATTGGCTATCTGCTGTTTGTGCTCAAGCTGGGCCCCAAAATCATGGAGCACC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16905R-9.in silico     61  GCACATTGATTGGCTATCTGCTGTTTGTGCTCAAGCTGGGCCCCAAAATCATGGAGCACC 120


16905R-9.IR_full       121 GAAAGCCCTTCCATTTGAATGGCGTCATCAGGATCTACAACATATTCCAGATCCTTTACA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16905R-9.in silico     121 GAAAGCCCTTCCATTTGAATGGCGTCATCAGGATCTACAACATATTCCAGATCCTTTACA 180


16905R-9.IR_full       181 ATGGTCTAATACTCGTTTTAGGAGTTCACTTCCTGTTTGTCCTGAAAGCCTACCAAATCA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16905R-9.in silico     181 ATGGTCTAATACTCGTTTTAGGAGTTCACTTCCTGTTTGTCCTGAAAGCCTACCAAATCA 240


16905R-9.IR_full       241 GTTGCATTGTTAGCCTGCCGATGGATCACAAATATAAGGATAGAGAGCGTTTGATTTGCA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16905R-9.in silico     241 GTTGCATTGTTAGCCTGCCGATGGATCACAAATATAAGGATAGAGAGCGTTTGATTTGCA 300


16905R-9.IR_full       301 CTTTGTACCTGGTGAACAAATTCGTAGACCTTGTGGAAACCATTTTCTTTGTGCTCCGCA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16905R-9.in silico     301 CTTTGTACCTGGTGAACAAATTCGTAGACCTTGTGGAAACCATTTTCTTTGTGCTCCGCA 360


16905R-9.IR_full       361 AAAAGGACAGACAGATATCCTTCCTGCACGTCTTCCATCATTTTGCGATGGCATTTTTTG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16905R-9.in silico     361 AAAAGGACAGACAGATATCCTTCCTGCACGTCTTCCATCATTTTGCGATGGCATTTTTTG 420


16905R-9.IR_full       421 GATATCTCTACTACTGCTTCCACGGATACGGTGGCGTTGCCTTTCCACAGTGCCTGCTAA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16905R-9.in silico     421 GATATCTCTACTACTGCTTCCACGGATACGGTGGCGTTGCCTTTCCACAGTGCCTGCTAA 480


16905R-9.IR_full       481 ACACCGCCGTCCACGTGATT 500
                           ||||||||||||||||||||
16905R-9.in silico     481 ACACCGCCGTCCACGTGATT 500

Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)

Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch

cv	0mm	1mm	2mm	3mm	target transcript	off target name
100	482	0	0	0	NM_141699.1	CG16905-RA (CG16905), mRNA
1.65	8	5	13	28	NM_141698.1	CG8534-RA (CG8534), mRNA
0.41	2	2	19	11	NM_141700.1	CG16904-RA (CG16904), mRNA
0	0	11	5	13	NM_169312.1	CG9458-RA (CG9458), mRNA
0	0	9	9	10	NM_142806.1	CG5278-RA (CG5278), mRNA
0	0	3	3	2	NM_140943.2	CG32227-RA (CG32227), mRNA
0	0	2	10	8	NM_141701.2	CG9459-RA (CG9459), mRNA
0	0	1	9	7	NM_132559.1	CG2750-RA (CG2750), mRNA
0	0	1	3	3	NM_142669.2	CG10830-RA (CG10830), mRNA
0	0	1	3	3	NM_079951.2	CG8269-RA (Dmn), mRNA
0	0	1	3	2	NM_165156.1	CG5813-RB, transcript variant B (chif), mRNA
0	0	1	2	5	NM_169739.1	CG31268-RA (CG31268), mRNA
0	0	1	2	5	NM_057346.3	CG3258-RA (ase), mRNA
0	0	1	2	2	NM_142796.2	CG7048-RA (CG7048), mRNA
0	0	1	2	2	NM_138017.1	CG3065-RA, transcript variant A (CG3065), mRNA
0	0	1	2	2	NM_166642.1	CG3065-RB, transcript variant B (CG3065), mRNA
0	0	1	2	2	NM_166643.1	CG3065-RC, transcript variant C (CG3065), mRNA
0	0	0	9	5	NM_176539.1	CG33110-RA (CG33110), mRNA
0	0	0	7	11	NM_170023.1	CG6921-RC, transcript variant C (CG6921), mRNA
0	0	0	7	11	NM_170022.1	CG6921-RA, transcript variant A (CG6921), mRNA
0	0	0	7	11	NM_142805.3	CG6921-RB, transcript variant B (CG6921), mRNA
0	0	0	5	2	NM_132017.1	CG3160-RA (CG3160), mRNA
0	0	0	4	24	NM_001032052.1	CG33715-RE, transcript variant E (Msp-300), mRNA
0	0	0	4	8	NM_079009.2	CG18076-RA, transcript variant A (shot), mRNA
0	0	0	4	8	NM_166017.1	CG18076-RE, transcript variant E (shot), mRNA
0	0	0	4	6	NM_141084.2	CG7162-RA (MED1), mRNA
0	0	0	4	3	NM_080085.2	CG3039-RA, transcript variant A (ogre), mRNA
0	0	0	4	2	NM_144372.1	CG13270-RA (Ugt36Ba), mRNA
0	0	0	3	14	NM_142803.1	CG5326-RA, transcript variant A (CG5326), mRNA
0	0	0	3	8	NM_140340.1	CG10971-RA, transcript variant A (CG10971), mRNA

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