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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 15644R-2 
 Symbol CG32584  Full Name CG32584 
 CG No CG32584  Old CG No CG15644 
 Synonyms CG18620, CG15644, CG32584 
 Accession No (Link to NCBI) NM_167452.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees semi-lethal 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCACCAAAAGCTCTTCAGGGA 
 Primer Seq. 3'
aatctagaggtaccTCTTGATCTTGTCGGACTTGC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCACCAAAAG CTCTTCAGGG AAATGGCAGA AGTCGTGTCC AATTCCAGCG ATGACGGGGA 
0061 GAAGTTGCTA ACCAAAAACT CTAGCAACAC CATCGAGAAG TCCGAGGAAG TCTGCAAGGA 
0121 GCGCCCCGAA GCTGTGGAGC AGATGCGCNA TCGATGTCAA TAACTCACTT GAGGACACGA 
0181 ACTACATGAA TGCGGTGGAA TCAGAAGCTC AAAAGAATAT CGCCGGCCTT GATGAGGACC 
0241 TTATCATGGA AGACTTCGGC GTCGAGGTCG TCCCNTTCCA CGATCCCTGG TCCAAGCTCC 
0301 TGATAAAGCA CCCCGTGCGC AACAAAAGGT GCGGTCATAT CTACGACCGC GAAACGGTTT 
0361 TAATGATCAT CAAGGACAAC ATTGGCATCC ATATGCCCGG TGCGCGACTG TCCCAACTTG 
0421 TCCGACATCA AGTTAGAGCA CCTGGTCAAG GACCCCGACG TGGAGCAGGA GTTGCAAAAG 
0481 CGCAAGTCCN GACAAGATCA AGA 
 in silico PCR Fragment
0001 CCACCAAAAG CTCTTCAGGG AAATGGCAGA AGTCGTGTCC AATTCCAGCG ATGACGGGGA 
0061 GAAGTTGCTA ACCAAAAACT CTAGCAACAC CATCGAGAAG TCCGAGGAAG TCTGCAAGGA 
0121 GCGCCCCGAA GCTGTGGAGC AGATGCGC-A TCGATGTCAA TAACTCACTT GAGGACACGA 
0181 ACTACATGAA TGCGGTGGAA TCAGAAGCTC AAAAGAATAT CGCCGGCCTT GATGAGGACC 
0241 TTATCATGGA AGACTTCGGC GTCGAGGTCG TCCCGTTCCA CGATCCCTGG TCCAAGCTCC 
0301 TGATAAAGCA CCCCGTGCGC AACAAAAGGT GCGGTCATAT CTACGACCGC GAAACGGTTT 
0361 TAATGATCAT CAAGGACAAC ATTGGCATCC -TATGCCCGG TGCGCGACTG TCCCAACTTG 
0421 TCCGACATCA AGTTAGAGCA CCTGGTCAAG GACCCCGACG TGGAGCAGGA GTTGCAAAAG 
0481 CGCAAGTCC- GACAAGATCA AGA 
 Assemble Data

15644R-2.IR_full       1   CCACCAAAAGCTCTTCAGGGAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15644R-2.in silico     1   CCACCAAAAGCTCTTCAGGGAAATGGCAGAAGTCGTGTCCAATTCCAGCGATGACGGGGA 60


15644R-2.IR_full       61  GAAGTTGCTAACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGTCTGCAAGGA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15644R-2.in silico     61  GAAGTTGCTAACCAAAAACTCTAGCAACACCATCGAGAAGTCCGAGGAAGTCTGCAAGGA 120


15644R-2.IR_full       121 GCGCCCCGAAGCTGTGGAGCAGATGCGCNATCGATGTCAATAACTCACTTGAGGACACGA 180
                           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
15644R-2.in silico     121 GCGCCCCGAAGCTGTGGAGCAGATGCGC-ATCGATGTCAATAACTCACTTGAGGACACGA 180


15644R-2.IR_full       181 ACTACATGAATGCGGTGGAATCAGAAGCTCAAAAGAATATCGCCGGCCTTGATGAGGACC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15644R-2.in silico     181 ACTACATGAATGCGGTGGAATCAGAAGCTCAAAAGAATATCGCCGGCCTTGATGAGGACC 240


15644R-2.IR_full       241 TTATCATGGAAGACTTCGGCGTCGAGGTCGTCCCNTTCCACGATCCCTGGTCCAAGCTCC 300
                           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
15644R-2.in silico     241 TTATCATGGAAGACTTCGGCGTCGAGGTCGTCCCGTTCCACGATCCCTGGTCCAAGCTCC 300


15644R-2.IR_full       301 TGATAAAGCACCCCGTGCGCAACAAAAGGTGCGGTCATATCTACGACCGCGAAACGGTTT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15644R-2.in silico     301 TGATAAAGCACCCCGTGCGCAACAAAAGGTGCGGTCATATCTACGACCGCGAAACGGTTT 360


15644R-2.IR_full       361 TAATGATCATCAAGGACAACATTGGCATCCATATGCCCGGTGCGCGACTGTCCCAACTTG 420
                           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
15644R-2.in silico     361 TAATGATCATCAAGGACAACATTGGCATCC-TATGCCCGGTGCGCGACTGTCCCAACTTG 420


15644R-2.IR_full       421 TCCGACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGGAGCAGGAGTTGCAAAAG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15644R-2.in silico     421 TCCGACATCAAGTTAGAGCACCTGGTCAAGGACCCCGACGTGGAGCAGGAGTTGCAAAAG 480


15644R-2.IR_full       481 CGCAAGTCCNGACAAGATCAAGA 503
                           ||||||||| |||||||||||||
15644R-2.in silico     481 CGCAAGTCC-GACAAGATCAAGA 503

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_167452.1  CG32584-RB, transcript variant B (CG32584), mRNA 
87.75   423  25  NM_167451.1  CG32584-RA, transcript variant A (CG32584), mRNA 
3.31   16  64  83  87  NM_132815.1  CG15645-RA, transcript variant A (CG15645), mRNA 
2.69   13  59  72  79  NM_167453.1  CG15645-RB, transcript variant B (CG15645), mRNA 
0   28  98  94  NM_140730.2  CG13732-RA (CG13732), mRNA 
0   NM_079320.2  CG10620-RA (Tsf2), mRNA 
0   NM_168801.1  CG9279-RB, transcript variant B (CG9279), mRNA 
0   NM_140867.1  CG9279-RA, transcript variant A (CG9279), mRNA 
0   NM_138220.1  CG13889-RA (CG13889), mRNA 
0   NM_001014514.1  CG2040-RD, transcript variant D (hig), mRNA 
0   NM_080371.2  CG2040-RC, transcript variant C (hig), mRNA 
0   NM_165666.1  CG2040-RB, transcript variant B (hig), mRNA 
0   NM_165667.1  CG2040-RA, transcript variant A (hig), mRNA 
0   NM_168361.1  CG16711-RB, transcript variant B (CG16711), mRNA 
0   NM_140090.1  CG16711-RA, transcript variant A (CG16711), mRNA 
0   NM_130462.2  CG6562-RB, transcript variant B (synj), mRNA 
0   NM_166505.1  CG6562-RA, transcript variant A (synj), mRNA 
0   NM_206714.1  CG5541-RB, transcript variant B (CG5541), mRNA 
0   NM_206715.1  CG5541-RA, transcript variant A (CG5541), mRNA 
0   NM_166040.1  CG8479-RA, transcript variant A (CG8479), mRNA 
0   NM_137097.2  CG8479-RB, transcript variant B (CG8479), mRNA 
0   NM_170455.1  CG7908-RA, transcript variant A (Tace), mRNA 
0   NM_143502.2  CG7908-RB, transcript variant B (Tace), mRNA 
0   NM_080328.2  CG15573-RB (Femcoat), mRNA 
0   NM_139985.2  CG5989-RA (CG5989), mRNA 
0   NM_137385.1  CG18432-RA (CG18432), mRNA 
0   NM_166472.1  CG10318-RB, transcript variant B (NC2alpha), mRNA 
0   10  15  NM_165139.1  CG4793-RC, transcript variant C (CG4793), mRNA 
0   NM_135768.2  CG16972-RA (CG16972), mRNA 
0   NM_139386.2  CG7974-RA (CG7974), mRNA 

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