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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 15635R-3 
 Symbol CG15635  Full Name CG15635 
 CG No CG15635  Old CG No CG15635 
 Synonyms CG15635 
 Accession No (Link to NCBI) NM_135002.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees male lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTCGATCGAATAAGATCCGGGG 
 Primer Seq. 3'
aatctagaggtaccATAAGCCGGATTCCAGATTGC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TCGATCGAAT AAGATCCGGG GAGTCCTACA CACCATTTCA TTTTCCCTAT GTTCCCGATA 
0061 ACTTCCCAAC ACCTTCGGCT CCTGcCCCTC CACCAAAACC ACGTCCGCCA CCTCCACCTC 
0121 CACCACCTCC AACTACAACA CGTCCACCAA CTACAACACC TACACCAACT ACGACACCTA 
0181 CACCAATAAC GACACCTCCA CCGCCTCCAC CCTCTGCACC ACCACCTCCT GATCCAGCAA 
0241 CCCCTGGAGT ATGGTATCCA CTCCCCATAT ATGGGNAACG CACCACAATT TGGAGATCCA 
0301 CCTGGATCGC ACTTGCTTTC CAATTCAGGA AAACCACATC CACCAGGATC ACAGATGCCT 
0361 CCCAATTCAG GATTCGTCCT TCCCCCAGCG ATCTGCAGTC CGCCTTATGG ACCACCGAAT 
0421 CAAGATGGAA ATCCACNCTG GATCACAGAC GCCTCCCAAT TCAGAATTGG TTCCTCCCCC 
0481 AGCAATCTGG AATCCGGCTT AT 
 in silico PCR Fragment
0001 TCGATCGAAT AAGATCCGGG GAGTCCTACA CACCATTTCA TTTTCCCTAT GTTCCCGATA 
0061 ACTTCCCAAC ACCTTCGGCT CCTGCCCCTC CACCAAAACC ACGTCCGCCA CCTCCACCTC 
0121 CACCACCTCC AACTACAACA CGTCCACCAA CTACAACACC TACACCAACT ACGACACCTA 
0181 CACCAATAAC GACACCTCCA CCGCCTCCAC CCTCTGCACC ACCACCTCCT GATCCAGCAA 
0241 CCCCTGGAGT ATGGTATCCA CTCCCCATAT ATGGG-AACG CACCACAATT TGGAGATCCA 
0301 CCTGGATCGC ACTTGCTTTC CAATTCAGGA AAACCACATC CACCAGGATC ACAGATGCCT 
0361 CCCAATTCAG GATTCGTCCT TCCCCCAGCG ATCTGCAGTC CGCCTTATGG ACCACCGAAT 
0421 CAAGATGGAA ATCCAC-CTG GATCACAGAC GCCTCCCAAT TCAGAATTGG TTCCTCCCCC 
0481 AGCAATCTGG AATCCGGCTT AT 
 Assemble Data

15635R-3.IR_full       1   TCGATCGAATAAGATCCGGGGAGTCCTACACACCATTTCATTTTCCCTATGTTCCCGATA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15635R-3.in silico     1   TCGATCGAATAAGATCCGGGGAGTCCTACACACCATTTCATTTTCCCTATGTTCCCGATA 60


15635R-3.IR_full       61  ACTTCCCAACACCTTCGGCTCCTGCCCCTCCACCAAAACCACGTCCGCCACCTCCACCTC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15635R-3.in silico     61  ACTTCCCAACACCTTCGGCTCCTGCCCCTCCACCAAAACCACGTCCGCCACCTCCACCTC 120


15635R-3.IR_full       121 CACCACCTCCAACTACAACACGTCCACCAACTACAACACCTACACCAACTACGACACCTA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15635R-3.in silico     121 CACCACCTCCAACTACAACACGTCCACCAACTACAACACCTACACCAACTACGACACCTA 180


15635R-3.IR_full       181 CACCAATAACGACACCTCCACCGCCTCCACCCTCTGCACCACCACCTCCTGATCCAGCAA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15635R-3.in silico     181 CACCAATAACGACACCTCCACCGCCTCCACCCTCTGCACCACCACCTCCTGATCCAGCAA 240


15635R-3.IR_full       241 CCCCTGGAGTATGGTATCCACTCCCCATATATGGGNAACGCACCACAATTTGGAGATCCA 300
                           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
15635R-3.in silico     241 CCCCTGGAGTATGGTATCCACTCCCCATATATGGG-AACGCACCACAATTTGGAGATCCA 300


15635R-3.IR_full       301 CCTGGATCGCACTTGCTTTCCAATTCAGGAAAACCACATCCACCAGGATCACAGATGCCT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15635R-3.in silico     301 CCTGGATCGCACTTGCTTTCCAATTCAGGAAAACCACATCCACCAGGATCACAGATGCCT 360


15635R-3.IR_full       361 CCCAATTCAGGATTCGTCCTTCCCCCAGCGATCTGCAGTCCGCCTTATGGACCACCGAAT 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15635R-3.in silico     361 CCCAATTCAGGATTCGTCCTTCCCCCAGCGATCTGCAGTCCGCCTTATGGACCACCGAAT 420


15635R-3.IR_full       421 CAAGATGGAAATCCACNCTGGATCACAGACGCCTCCCAATTCAGAATTGGTTCCTCCCCC 480
                           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
15635R-3.in silico     421 CAAGATGGAAATCCAC-CTGGATCACAGACGCCTCCCAATTCAGAATTGGTTCCTCCCCC 480


15635R-3.IR_full       481 AGCAATCTGGAATCCGGCTTAT 502
                           ||||||||||||||||||||||
15635R-3.in silico     481 AGCAATCTGGAATCCGGCTTAT 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
107.67  519  208  575  902  NM_135002.1  CG15635-RA (CG15635), mRNA 
0.41   27  NM_168366.2  CG32046-RB, transcript variant B (CG32046), mRNA 
0.41   27  NM_168367.1  CG32046-RA, transcript variant A (CG32046), mRNA 
0.41   16  NM_001042799.1  CG10966-RB, transcript variant B (rdgA), mRNA 
0.41   16  NM_078537.2  CG10966-RA, transcript variant A (rdgA), mRNA 
0.41   15  NM_133112.1  CG7349-RA (CG7349), mRNA 
0.2   21  43  NM_144026.1  CG11458-RA (CG11458), mRNA 
0   29  59  NM_133104.2  CG7282-RA (CG7282), mRNA 
0   26  44  NM_165522.1  CG11112-RB, transcript variant B (CG11112), mRNA 
0   31  NM_169449.2  CG14736-RC, transcript variant C (CG14736), mRNA 
0   31  NM_169448.1  CG14736-RA, transcript variant A (CG14736), mRNA 
0   31  NM_169447.1  CG14736-RB, transcript variant B (CG14736), mRNA 
0   10  40  NM_132976.1  CG5172-RA, transcript variant A (CG5172), mRNA 
0   32  NM_079336.2  CG7002-RA (Hml), mRNA 
0   30  NM_057459.3  CG12749-RA, transcript variant A (Hrb87F), mRNA 
0   NM_080047.2  CG8491-RA (kto), mRNA 
0   27  56  NM_132661.1  CG12726-RA (CG12726), mRNA 
0   26  76  NM_139645.2  CG15021-RA (CG15021), mRNA 
0   14  21  NM_169056.1  CG31550-RB, transcript variant B (CG31550), mRNA 
0   NM_140664.2  CG9706-RA, transcript variant A (CG9706), mRNA 
0   NM_168684.1  CG9706-RB, transcript variant B (CG9706), mRNA 
0   18  26  NM_132141.1  CG14431-RA (CG14431), mRNA 
0   17  41  NM_136925.1  CG30042-RA (CG30042), mRNA 
0   40  NM_079908.2  CG5406-RA, transcript variant A (sif), mRNA 
0   40  NM_206278.1  CG5406-RC, transcript variant C (sif), mRNA 
0   22  NM_170029.1  CG31161-RA (CG31161), mRNA 
0   NM_141084.2  CG7162-RA (MED1), mRNA 
0   16  NM_057458.3  CG12749-RB, transcript variant B (Hrb87F), mRNA 
0   11  NM_166623.1  CG4051-RA (egl), mRNA 
0   NM_164512.1  CG31950-RA (CG31950), mRNA 

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