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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 14891R-2 
 Symbol CG14891  Full Name CG14891 
 CG No CG14891  Old CG No CG14891 
 Synonyms CG14891 
 Accession No (Link to NCBI) NM_142303.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGAGGTTGTGCGACAGCTGAC 
 Primer Seq. 3'
aatctagaggtaccGCGGGCCACCTGTTACACAAT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CGAgGTTGTG CGACAgcTGA CGAGTCTCCG GGAGTAGGCG GTTTTTGAAG TACCAGCTCC 
0061 TGAAGTACTT CTCGATTTTC GGAAAAGTAG AGAAACTCCA TTGGAAAAAG AAAAAAAGAT 
0121 CGGGATCGGT TCTTTTTTAT GAGGCTACCC ATGCGGCAAA GGCTTTGTAT TGTACTAAGC 
0181 ACACTATCGA TGGACATGAT CTTTATTTAC AGGCCAGCAC CTCCTGGCAC CCAACGCCGG 
0241 TGGAGGAATC AGGAACTCTT TCTGCCTACG ATCTACCCAT TACCGATGAC ATTTGGTGGA 
0301 AAGTGCTCGA TTATCTATCA CTAAATGAAC GTCTCAACTT TGCCGCCAGT TGTGAAAGAT 
0361 TCCAGGCGAT CTACGAATTG GATTCGCATC GGATCAATCA TGTTCTTAAT ATGAAGGACG 
0421 TTTGCACACT gaCCCACCGG GTCATTAAAA GATTGATGCT GCTATCAGGA AAACACATTC 
0481 ATTGTGTAAC AGGTGGcCCG c 
 in silico PCR Fragment
0001 CGAGGTTGTG CGACAGCTGA CGA-TCTCCG GGAGTAGGCG GTTTTTGAAG TACCAGCTCC 
0061 TGAAGTACTT CTCGATTTTC GGAAAAGTAG AGAAACTCCA TTGGAAAAAG AAAAAAAGAT 
0121 CGGGATCGGT TCTTTTTTAT GAGGCTACCC ATGCGGCAAA GGCTTTGTAT TGTACTAAGC 
0181 ACACTATCGA TGGACATGAT CTTTATTTAC AGGCCAGCAC CTCCTGGCAC CCAACGCCGG 
0241 TGGAGGAATC AGGAACTCTT TCTGCCTACG ATCTACCCAT TACCGATGAC ATTTGGTGGA 
0301 AAGTGCTCGA TTATCTATCA CTAAATGAAC GTCTCAACTT TGCCGCCAGT TGTGAAAGAT 
0361 TCCAGGCGAT CTACGAATTG GATTCGCATC GGATCAATCA TGTTCTTAAT ATGAAGGACG 
0421 TTTGCACACT GACCCACCGG GTCATTAAAA GATTGATGCT GCTATCAGGA AAACACATTC 
0481 ATTGTGTAAC AGGTGGCCCG C 
 Assemble Data

14891R-2.IR_full       1   CGAGGTTGTGCGACAGCTGACGAGTCTCCGGGAGTAGGCGGTTTTTGAAGTACCAGCTCC 60
                           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
14891R-2.in silico     1   CGAGGTTGTGCGACAGCTGACGA-TCTCCGGGAGTAGGCGGTTTTTGAAGTACCAGCTCC 60


14891R-2.IR_full       61  TGAAGTACTTCTCGATTTTCGGAAAAGTAGAGAAACTCCATTGGAAAAAGAAAAAAAGAT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14891R-2.in silico     61  TGAAGTACTTCTCGATTTTCGGAAAAGTAGAGAAACTCCATTGGAAAAAGAAAAAAAGAT 120


14891R-2.IR_full       121 CGGGATCGGTTCTTTTTTATGAGGCTACCCATGCGGCAAAGGCTTTGTATTGTACTAAGC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14891R-2.in silico     121 CGGGATCGGTTCTTTTTTATGAGGCTACCCATGCGGCAAAGGCTTTGTATTGTACTAAGC 180


14891R-2.IR_full       181 ACACTATCGATGGACATGATCTTTATTTACAGGCCAGCACCTCCTGGCACCCAACGCCGG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14891R-2.in silico     181 ACACTATCGATGGACATGATCTTTATTTACAGGCCAGCACCTCCTGGCACCCAACGCCGG 240


14891R-2.IR_full       241 TGGAGGAATCAGGAACTCTTTCTGCCTACGATCTACCCATTACCGATGACATTTGGTGGA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14891R-2.in silico     241 TGGAGGAATCAGGAACTCTTTCTGCCTACGATCTACCCATTACCGATGACATTTGGTGGA 300


14891R-2.IR_full       301 AAGTGCTCGATTATCTATCACTAAATGAACGTCTCAACTTTGCCGCCAGTTGTGAAAGAT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14891R-2.in silico     301 AAGTGCTCGATTATCTATCACTAAATGAACGTCTCAACTTTGCCGCCAGTTGTGAAAGAT 360


14891R-2.IR_full       361 TCCAGGCGATCTACGAATTGGATTCGCATCGGATCAATCATGTTCTTAATATGAAGGACG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14891R-2.in silico     361 TCCAGGCGATCTACGAATTGGATTCGCATCGGATCAATCATGTTCTTAATATGAAGGACG 420


14891R-2.IR_full       421 TTTGCACACTGACCCACCGGGTCATTAAAAGATTGATGCTGCTATCAGGAAAACACATTC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14891R-2.in silico     421 TTTGCACACTGACCCACCGGGTCATTAAAAGATTGATGCTGCTATCAGGAAAACACATTC 480


14891R-2.IR_full       481 ATTGTGTAACAGGTGGCCCGC 501
                           |||||||||||||||||||||
14891R-2.in silico     481 ATTGTGTAACAGGTGGCCCGC 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_142303.2  CG14891-RA, transcript variant A (CG14891), mRNA 
47.09   227  NM_169723.1  CG14891-RB, transcript variant B (CG14891), mRNA 
0   NM_143588.2  CG15556-RA (CG15556), mRNA 
0   NM_170467.1  CG31025-RB, transcript variant B (CG31025), mRNA 
0   NM_170466.1  CG31025-RA, transcript variant A (CG31025), mRNA 
0   NM_165944.1  CG13148-RB, transcript variant B (CG13148), mRNA 
0   NM_136967.1  CG13148-RA, transcript variant A (CG13148), mRNA 
0   NM_132700.2  CG10997-RA (Clic), mRNA 
0   NM_165814.2  CG9062-RB (CG9062), mRNA 
0   NM_143469.1  CG7837-RA (CG7837), mRNA 
0   NM_137201.2  CG8187-RA (CG8187), mRNA 
0   NM_057269.2  CG10236-RA (LanA), mRNA 
0   NM_078774.3  CG13778-RA, transcript variant A (Mnn1), mRNA 
0   NM_001042877.1  CG13778-RC, transcript variant C (Mnn1), mRNA 
0   NM_164739.1  CG13778-RB, transcript variant B (Mnn1), mRNA 
0   NM_167188.1  CG32703-RA (CG32703), mRNA 
0   NM_079372.2  CG6215-RA (CkIIalpha-i1), mRNA 
0   NM_139493.2  CG2083-RA (CG2083), mRNA 
0   NM_136730.1  CG12905-RA (Obp46a), mRNA 
0   NM_136635.2  CG2078-RA (Myd88), mRNA 
0   NM_168525.1  CG10948-RA, transcript variant A (CG10948), mRNA 
0   NM_168524.1  CG10948-RC, transcript variant C (CG10948), mRNA 
0   NM_170503.1  CG1539-RD, transcript variant D (tmod), mRNA 
0   NM_170505.1  CG1539-RF, transcript variant F (tmod), mRNA 
0   NM_140349.2  CG10948-RB, transcript variant B (CG10948), mRNA 
0   NM_142933.1  CG13597-RA (CG13597), mRNA 
0   NM_079507.2  CG2530-RA (corto), mRNA 
0   NM_141793.1  CG4820-RA (CG4820), mRNA 
0   NM_132116.1  CG14441-RA (CG14441), mRNA 
0   NM_167620.2  CG32547-RA (CG32547), mRNA 

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