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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 14527R-3 
 Symbol CG14527  Full Name CG14527 
 CG No CG14527  Old CG No CG14527 
 Synonyms CG14527 
 Accession No (Link to NCBI) NM_143388.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgAGCGAGGATGTACTCAACCAG 
 Primer Seq. 3'
aatctagaggtaccTTATTGGCGAAGTCCGTGGCG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 AGCGAGGATG TACTCAACCA GGACACGCCT TACATGAAGG AACTAATGCG TCAAGCCAAA 
0061 GCTGCTGAGA TCGAGAGCTT TATGAACCAG AAGGTGGATC CGTGCAAGGA TTTCTACGCA 
0121 TTCTCCTGTG GCAACTATAA ACGCATCAAC TCAGCTTTGA ACATGCGGGT ATTGACTACT 
0181 GGAGTGTTCG AGACTTTGAC AAAAGGGCTC AACCGAAAGA TCCTGAAGAT GCTCAACACA 
0241 CCCCATGATA GCCACGACAC TCCGGAGGAC ATTCAGGTGA AGCACTTCTA CGAGTCCTGT 
0301 CTCCAGATCA AGGAGCTCAA CTCGACGTAC AGCGAAAAGC TGAAGCGGCT CATTGCAGAA 
0361 TTTGGAACGA TGCCGCTGCT GGAAGGATCC TCCTGGCAGG AGGACGACTT TGACTGGCTG 
0421 AATACTACTG CTCGCATGGC CCACCGATAC GGAATAATGT CCATTATAGG CGTTGGAGTC 
0481 GCCACGGACT TCGCCAATAA  
 in silico PCR Fragment
0001 AGCGAGGATG TACTCAACCA GGACACGCCT TACATGAAGG AACTAATGCG TCAAGCCAAA 
0061 GCTGCTGAGA TCGAGAGCTT TATGAACCAG AAGGTGGATC CGTGCAAGGA TTTCTACGCA 
0121 TTCTCCTGTG GCAACTATAA ACGCATCAAC TCGGCTTTGA ACATGCGGGT ATTGACTACT 
0181 GGAGTGTTCG AGACTTTGAC AAAAGGGCTC AACCGAAAGA TCCTGAAGAT GCTCAACACA 
0241 CCCCATGATA GCCACGACAC TCCGGAGGAC ATTCAGGTGA AGCACTTCTA CGAGTCCTGT 
0301 CTCCAGATCA AGGAGCTCAA CTCGACGTAC AGCGAAAAGC TGAAGCGGCT CATTGCAGAA 
0361 TTTGGAACGA TGCCGCTGCT GGAAGGATCC TCCTGGCAGG AGGACGACTT TGACTGGCTG 
0421 AATACTACTG CTCGCATGGC CCACCGATAC GGAATAATGT CCATTATAGG CGTTGGAGTC 
0481 GCCACGGACT TCGCCAATAA  
 Assemble Data

14527R-3.IR_full       1   AGCGAGGATGTACTCAACCAGGACACGCCTTACATGAAGGAACTAATGCGTCAAGCCAAA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14527R-3.in silico     1   AGCGAGGATGTACTCAACCAGGACACGCCTTACATGAAGGAACTAATGCGTCAAGCCAAA 60


14527R-3.IR_full       61  GCTGCTGAGATCGAGAGCTTTATGAACCAGAAGGTGGATCCGTGCAAGGATTTCTACGCA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14527R-3.in silico     61  GCTGCTGAGATCGAGAGCTTTATGAACCAGAAGGTGGATCCGTGCAAGGATTTCTACGCA 120


14527R-3.IR_full       121 TTCTCCTGTGGCAACTATAAACGCATCAACTCAGCTTTGAACATGCGGGTATTGACTACT 180
                           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
14527R-3.in silico     121 TTCTCCTGTGGCAACTATAAACGCATCAACTCGGCTTTGAACATGCGGGTATTGACTACT 180


14527R-3.IR_full       181 GGAGTGTTCGAGACTTTGACAAAAGGGCTCAACCGAAAGATCCTGAAGATGCTCAACACA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14527R-3.in silico     181 GGAGTGTTCGAGACTTTGACAAAAGGGCTCAACCGAAAGATCCTGAAGATGCTCAACACA 240


14527R-3.IR_full       241 CCCCATGATAGCCACGACACTCCGGAGGACATTCAGGTGAAGCACTTCTACGAGTCCTGT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14527R-3.in silico     241 CCCCATGATAGCCACGACACTCCGGAGGACATTCAGGTGAAGCACTTCTACGAGTCCTGT 300


14527R-3.IR_full       301 CTCCAGATCAAGGAGCTCAACTCGACGTACAGCGAAAAGCTGAAGCGGCTCATTGCAGAA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14527R-3.in silico     301 CTCCAGATCAAGGAGCTCAACTCGACGTACAGCGAAAAGCTGAAGCGGCTCATTGCAGAA 360


14527R-3.IR_full       361 TTTGGAACGATGCCGCTGCTGGAAGGATCCTCCTGGCAGGAGGACGACTTTGACTGGCTG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14527R-3.in silico     361 TTTGGAACGATGCCGCTGCTGGAAGGATCCTCCTGGCAGGAGGACGACTTTGACTGGCTG 420


14527R-3.IR_full       421 AATACTACTGCTCGCATGGCCCACCGATACGGAATAATGTCCATTATAGGCGTTGGAGTC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14527R-3.in silico     421 AATACTACTGCTCGCATGGCCCACCGATACGGAATAATGTCCATTATAGGCGTTGGAGTC 480


14527R-3.IR_full       481 GCCACGGACTTCGCCAATAA 500
                           ||||||||||||||||||||
14527R-3.in silico     481 GCCACGGACTTCGCCAATAA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_143388.1  CG14527-RA (CG14527), mRNA 
26.14   126  129  94  45  NM_143389.2  CG14526-RA (CG14526), mRNA 
0   NM_165200.1  CG32832-RA (CG32832), mRNA 
0   NM_168806.1  CG8798-RB, transcript variant B (CG8798), mRNA 
0   NM_140876.1  CG8798-RA, transcript variant A (CG8798), mRNA 
0   18  NM_167193.1  CG32702-RA (CG32702), mRNA 
0   NM_137123.2  CG17390-RA (CG17390), mRNA 
0   NM_136224.2  CG14400-RA (CG14400), mRNA 
0   15  NM_141666.2  CG9492-RA (CG9492), mRNA 
0   NM_137638.1  CG13426-RA (CG13426), mRNA 
0   NM_137891.1  CG3695-RA (MED23), mRNA 
0   NM_135642.2  CG6181-RA, transcript variant A (CG6181), mRNA 
0   NM_164957.1  CG6181-RB, transcript variant B (CG6181), mRNA 
0   NM_001042820.1  CG34145-RA (CG34145), mRNA 
0   12  NM_176520.1  CG33094-RB (Synd), mRNA 
0   NM_080020.3  CG11491-RE, transcript variant E (br), mRNA 
0   NM_079803.2  CG6127-RA (Ser), mRNA 
0   NM_166898.1  CG11491-RG, transcript variant G (br), mRNA 
0   NM_143372.1  CG9995-RA (htt), mRNA 
0   NM_001032073.1  CG6713-RB, transcript variant B (Nos), mRNA 
0   NM_001032072.1  CG6713-RC, transcript variant C (Nos), mRNA 
0   NM_001032070.1  CG6713-RE, transcript variant E (Nos), mRNA 
0   NM_001032067.1  CG6713-RH, transcript variant H (Nos), mRNA 
0   NM_001032075.1  CG6713-RI, transcript variant I (Nos), mRNA 
0   NM_001032074.1  CG6713-RJ, transcript variant J (Nos), mRNA 
0   NM_001032069.1  CG6713-RF, transcript variant F (Nos), mRNA 
0   NM_001032068.1  CG6713-RG, transcript variant G (Nos), mRNA 
0   NM_078817.3  CG6713-RA, transcript variant A (Nos), mRNA 
0   NM_001032071.1  CG6713-RD, transcript variant D (Nos), mRNA 
0   NM_175958.1  CG15444-RC, transcript variant C (ine), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
+- 
DC
DM
 
VM
 
VB
 
Caspase-3 signal
N
++ 
DB
DC
 
DM
VM
VB
 
Dcompartment   Penetrance
   

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