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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 14251R-4 
 Symbol ms(3)K81  Full Name male sterile (3) K81 
 CG No CG14251  Old CG No CG14251 
 Synonyms K81, ph, ms(3)k81, ms(3)97Dg, CG14251, ms(3)K81 
 Accession No (Link to NCBI) NM_143253.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATGTCGGATTCGCCCCATGAG 
 Primer Seq. 3'
aatctagaggtaccACAAACTGGCGCCTTTTCGGA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ATGTCGGATT CGGCCCCATG AGGAGCACCG CTTGTGCGGT CTGGGGAATC ACACGCTGAG 
0061 GTCCCCGTAC CGCGTAATCA GAAATCCGCA CCTGCTGAAG TTTGGCCAGC TGATAAACTC 
0121 GGAGCTGCGG TCTCAGCCAC TGTGCCTCTC GTGCTACACG CAACTGATCC AGCTCTACCG 
0181 GCTGAAGAAC AACAATGCGA AGAGACACCT GGCAAATAGA CAGGCAGCCA GTGCTATTCT 
0241 CTCGAGGAGC AGTAGTGAGA AATCTCATGA GTCCGCGGCT AGTGTGTCCA CAACACAATC 
0301 CTCGGAGGAG CAAGAATCAA CCACTANGCG CAGcGCCGGC GGCGGCGGCN TTCAAAGAGC 
0361 AGGAAGCCAG TTGGTTGAGT CCAATTCTTC CGACGATACA CTTTTCTCCG ATGACTACGA 
0421 TCCCAGCTCG AATCTGAGTT TGAATGCCGT GAATGGAACG CGGCTACCGA ATGTCCAACC 
0481 AATTCCGAAA AGGCGCCAGT TTGT 
 in silico PCR Fragment
0001 ATGTCGGATT C-GCCCCATG AGGAGCACCG CTTGTGCGGT CTGGGGAATC ACACGCTGAG 
0061 GTCCCCGTAC CGCGTAATCA GAAATCCGCA CCTGCTGAAG TTTGGCCAGC TGATAAACTC 
0121 GGAGCTGCGG TCTCAGCCAC TGTGCCTCTC GTGCTACACG CAACTGATCC AGCTCTACCG 
0181 GCTGAAGAAC AACAATGCGA AGAGACACCT GGCAAATAGA CAGGCAGCCA GTGCTATTCT 
0241 CTCGAGGAGC AGTAGTGAGA AATCTCATGA GTCCGCGGCT AGTGTGTCCA CAACACAATC 
0301 CTCGGAGGAG CAAGAATCAA CCACTA-GCG CAGCGCCGGC GGCGGCGGC- -TCAAAGAGC 
0361 AGGAAGCCAG TTGGTTGAGT CCAATTCTTC CGACGATACA CTTTTCTCCG ATGACTACGA 
0421 TCCCAGCTCG AATCTGAGTT TGAATGCCGT GAATGGAACG CGGCTACCGA ATGTCCAACC 
0481 AATTCCGAAA AGGCGCCAGT TTGT 
 Assemble Data

14251R-4.IR_full       1   ATGTCGGATTCGGCCCCATGAGGAGCACCGCTTGTGCGGTCTGGGGAATCACACGCTGAG 60
                           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
14251R-4.in silico     1   ATGTCGGATTC-GCCCCATGAGGAGCACCGCTTGTGCGGTCTGGGGAATCACACGCTGAG 60


14251R-4.IR_full       61  GTCCCCGTACCGCGTAATCAGAAATCCGCACCTGCTGAAGTTTGGCCAGCTGATAAACTC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14251R-4.in silico     61  GTCCCCGTACCGCGTAATCAGAAATCCGCACCTGCTGAAGTTTGGCCAGCTGATAAACTC 120


14251R-4.IR_full       121 GGAGCTGCGGTCTCAGCCACTGTGCCTCTCGTGCTACACGCAACTGATCCAGCTCTACCG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14251R-4.in silico     121 GGAGCTGCGGTCTCAGCCACTGTGCCTCTCGTGCTACACGCAACTGATCCAGCTCTACCG 180


14251R-4.IR_full       181 GCTGAAGAACAACAATGCGAAGAGACACCTGGCAAATAGACAGGCAGCCAGTGCTATTCT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14251R-4.in silico     181 GCTGAAGAACAACAATGCGAAGAGACACCTGGCAAATAGACAGGCAGCCAGTGCTATTCT 240


14251R-4.IR_full       241 CTCGAGGAGCAGTAGTGAGAAATCTCATGAGTCCGCGGCTAGTGTGTCCACAACACAATC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14251R-4.in silico     241 CTCGAGGAGCAGTAGTGAGAAATCTCATGAGTCCGCGGCTAGTGTGTCCACAACACAATC 300


14251R-4.IR_full       301 CTCGGAGGAGCAAGAATCAACCACTANGCGCAGCGCCGGCGGCGGCGGCNTTCAAAGAGC 360
                           |||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||||
14251R-4.in silico     301 CTCGGAGGAGCAAGAATCAACCACTA-GCGCAGCGCCGGCGGCGGCGGC--TCAAAGAGC 360


14251R-4.IR_full       361 AGGAAGCCAGTTGGTTGAGTCCAATTCTTCCGACGATACACTTTTCTCCGATGACTACGA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14251R-4.in silico     361 AGGAAGCCAGTTGGTTGAGTCCAATTCTTCCGACGATACACTTTTCTCCGATGACTACGA 420


14251R-4.IR_full       421 TCCCAGCTCGAATCTGAGTTTGAATGCCGTGAATGGAACGCGGCTACCGAATGTCCAACC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14251R-4.in silico     421 TCCCAGCTCGAATCTGAGTTTGAATGCCGTGAATGGAACGCGGCTACCGAATGTCCAACC 480


14251R-4.IR_full       481 AATTCCGAAAAGGCGCCAGTTTGT 504
                           ||||||||||||||||||||||||
14251R-4.in silico     481 AATTCCGAAAAGGCGCCAGTTTGT 504

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_143253.1  CG14251-RA (ms(3)K81), mRNA 
0   NM_001038712.1  CG33978-RA (CG33978), mRNA 
0   NM_140842.1  CG9629-RA (CG9629), mRNA 
0   NM_168439.1  CG6297-RA, transcript variant A (JIL-1), mRNA 
0   NM_140175.2  CG6297-RB, transcript variant B (JIL-1), mRNA 
0   28  26  NM_140804.2  CG6874-RA, transcript variant A (l(3)neo26), mRNA 
0   28  26  NM_168777.1  CG6874-RB, transcript variant B (l(3)neo26), mRNA 
0   15  NM_164716.1  CG31632-RA (CG31632), mRNA 
0   17  NM_141458.2  CG32466-RA, transcript variant A (rn), mRNA 
0   NM_167487.1  CG32577-RA (disco-r), mRNA 
0   NM_138988.2  CG11405-RA (A3-3), mRNA 
0   NM_133138.1  CG7884-RA (CG7884), mRNA 
0   NM_169970.1  CG6703-RA, transcript variant A (Caki), mRNA 
0   18  NM_001014727.1  CG12154-RB, transcript variant B (oc), mRNA 
0   18  NM_078536.3  CG12154-RA, transcript variant A (oc), mRNA 
0   NM_141883.1  CG3397-RA (CG3397), mRNA 
0   NM_135408.2  CG9466-RA (CG9466), mRNA 
0   NM_170621.3  CG12052-RE, transcript variant E (lola), mRNA 
0   NM_170620.2  CG12052-RD, transcript variant D (lola), mRNA 
0   NM_057714.3  CG12296-RA (klu), mRNA 
0   NM_169357.1  CG31390-RA (MED7), mRNA 
0   10  NM_132381.2  CG15309-RA (CG15309), mRNA 
0   NM_176342.1  CG11661-RH, transcript variant H (Nc73EF), mRNA 
0   NM_168701.2  CG11661-RA, transcript variant A (Nc73EF), mRNA 
0   NM_168702.1  CG11661-RB, transcript variant B (Nc73EF), mRNA 
0   NM_176341.1  CG11661-RG, transcript variant G (Nc73EF), mRNA 
0   NM_176340.1  CG11661-RF, transcript variant F (Nc73EF), mRNA 
0   NM_168703.2  CG11661-RC, transcript variant C (Nc73EF), mRNA 
0   NM_132121.2  CG3135-RA (shf), mRNA 
0   NM_176751.1  CG8557-RB, transcript variant B (CG8557), mRNA 

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