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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 14027R-1 
 Symbol TotM  Full Name Turandot M 
 CG No CG14027  Old CG No CG14027 
 Synonyms totM, tot, CG14027, TotM 
 Accession No (Link to NCBI) NM_078758.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees semi-lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTTGAGCTGCCTTATGGTCTTC 
 Primer Seq. 3'
aatctagaggtaccTCAATAGCACGCTTGACTCCC 
 Predicted Fragment Size
371 
 IR fragment full Seq
0001 TTGAGCTGCC TTATGGTCTT CTCAGTGTTT CTGCTGGGAA AGGTAAATGC TGAGAACGAA 
0061 GATGAGTTCG TCACAGAAAA ACAGCGCCTA TTTAGTGTGT ATGGTGATTC TTCGGTTGAT 
0121 GAGGCCACCA AATACCGGAA CATCGACAGC CTGGTCACTT TCTACGATAA GTACTTCACT 
0181 CGACTTCAGT TGAAACCGGA CTTGAACACA CGCGCCCATG ATCTCTTGAG GCGTTACAAG 
0241 GAGGAAAATG CTCGTGTGGT CTTGGTGGAC GGTANCTCCc gCACAAGGCG GATTCTGGTT 
0301 GCCACTGGTG AAGCTACTCA TTGTCCAGCT GGGCGTCGAA ATTGCCTCTG AGGGAGTCAA 
0361 GCGTGCTATT GA 
 in silico PCR Fragment
0001 TTGAGCTGCC TTATGGTCTT CTCAGTGTTT CTGCTGGGAA AGGTAAATGC TGAGAACGAA 
0061 GATGAGTTCG TCACAGAAAA ACAGCGCCTA TTTAGTGTGT ATGGTGATTC TTCGGTTGAT 
0121 GAGGCCACCA AATACCGGAA CATCGACAGC CTGGTCACTT TCTACGATAA GTACTTCACT 
0181 CGACTTCAGT TGAAACCGGA CTTGAACACA CGCGCCCATG ATCTCTTGAG GCGTTACAAG 
0241 GAGGAAAATG CTCGTGTGGT CTTGGTGGAC GGTA-CTCCC GCACAAGGCG GATTCTGGTT 
0301 GCCACTGGTG AAGCTACTCA TTGTCCAGCT GGGCGTCGAA ATTGCCTCTG AGGGAGTCAA 
0361 GCGTGCTATT GA 
 Assemble Data

14027R-1.IR_full       1   TTGAGCTGCCTTATGGTCTTCTCAGTGTTTCTGCTGGGAAAGGTAAATGCTGAGAACGAA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14027R-1.in silico     1   TTGAGCTGCCTTATGGTCTTCTCAGTGTTTCTGCTGGGAAAGGTAAATGCTGAGAACGAA 60


14027R-1.IR_full       61  GATGAGTTCGTCACAGAAAAACAGCGCCTATTTAGTGTGTATGGTGATTCTTCGGTTGAT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14027R-1.in silico     61  GATGAGTTCGTCACAGAAAAACAGCGCCTATTTAGTGTGTATGGTGATTCTTCGGTTGAT 120


14027R-1.IR_full       121 GAGGCCACCAAATACCGGAACATCGACAGCCTGGTCACTTTCTACGATAAGTACTTCACT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14027R-1.in silico     121 GAGGCCACCAAATACCGGAACATCGACAGCCTGGTCACTTTCTACGATAAGTACTTCACT 180


14027R-1.IR_full       181 CGACTTCAGTTGAAACCGGACTTGAACACACGCGCCCATGATCTCTTGAGGCGTTACAAG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14027R-1.in silico     181 CGACTTCAGTTGAAACCGGACTTGAACACACGCGCCCATGATCTCTTGAGGCGTTACAAG 240


14027R-1.IR_full       241 GAGGAAAATGCTCGTGTGGTCTTGGTGGACGGTANCTCCCGCACAAGGCGGATTCTGGTT 300
                           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
14027R-1.in silico     241 GAGGAAAATGCTCGTGTGGTCTTGGTGGACGGTA-CTCCCGCACAAGGCGGATTCTGGTT 300


14027R-1.IR_full       301 GCCACTGGTGAAGCTACTCATTGTCCAGCTGGGCGTCGAAATTGCCTCTGAGGGAGTCAA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14027R-1.in silico     301 GCCACTGGTGAAGCTACTCATTGTCCAGCTGGGCGTCGAAATTGCCTCTGAGGGAGTCAA 360


14027R-1.IR_full       361 GCGTGCTATTGA 372
                           ||||||||||||
14027R-1.in silico     361 GCGTGCTATTGA 372

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   353  NM_078758.2  CG14027-RA (TotM), mRNA 
0   NM_167245.1  CG32672-RA (Atg8a), mRNA 
0   NM_168733.1  CG32176-RA (CG32176), mRNA 
0   NM_057719.3  CG8274-RA (Mtor), mRNA 
0   NM_143252.2  CG6378-RA (BM-40-SPARC), mRNA 
0   NM_138985.2  CG8947-RA (26-29-p), mRNA 
0   NM_140008.1  CG5741-RA (CG5741), mRNA 
0   NM_136761.2  CG7614-RA (Mat1), mRNA 
0   NM_140688.2  CG7728-RA (CG7728), mRNA 
0   NM_206765.1  CG18572-RB, transcript variant B (r), mRNA 
0   NM_078653.1  CG18572-RA, transcript variant A (r), mRNA 
0   NM_136202.4  CG31678-RA (CG31678), mRNA 
0   NM_142428.1  CG12321-RA (CG12321), mRNA 
0   NM_140353.1  CG14120-RA (CG14120), mRNA 
0   NM_137047.2  CG6197-RA (CG6197), mRNA 
0   NM_132163.2  CG2079-RA (Dok), mRNA 
0   NM_169352.2  CG31391-RA (CG31391), mRNA 
0   NM_080076.2  CG11770-RA (lin), mRNA 
0   NM_138005.1  CG13562-RA (CG13562), mRNA 
0   NM_167275.1  CG32668-RA (CG32668), mRNA 
0   NM_142484.1  CG7705-RA, transcript variant A (CG7705), mRNA 
0   NM_138253.2  CG9186-RB, transcript variant B (CG9186), mRNA 
0   NM_167867.1  CG9186-RA, transcript variant A (CG9186), mRNA 
0   NM_140327.1  CG10522-RA (sti), mRNA 
0   NM_130492.2  CG13366-RA, transcript variant A (CG13366), mRNA 
0   NM_001042789.1  CG13366-RB, transcript variant B (CG13366), mRNA 
0   NM_057676.3  CG11312-RA (insc), mRNA 
0   NM_142933.1  CG13597-RA (CG13597), mRNA 
0   NM_141933.1  CG5167-RA (CG5167), mRNA 
0   NM_165220.1  CG6605-RA (BicD), mRNA 

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