National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 13977R-4 
 Symbol Cyp6a18  Full Name Cyp6a18 
 CG No CG13977  Old CG No CG13977 
 Synonyms 6a18, CG13977, Cyp6a18 
 Accession No (Link to NCBI) NM_143306.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgAAGAGGCGTGGCATTCCGTAT 
 Primer Seq. 3'
aatctagaggtaccCATTTGATGCCAAAGGCACAG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 AAGAGGCGTG GCATTCCGTA TGATAAACCC CATCCTCTCA GAGGAAATAT GGAGGGATAT 
0061 AAGAAAACGA GGACCGTTCA CGAAATCCAC CAGGAATACT ACAACAAATA TCGAAATAGC 
0121 AAGGCTCCTT TTGTGGGATT CTATCTGTTT CAGAAGCCCG CCGCATTTGT TATAGATCTG 
0181 GAGCTGGCCA AGCAAATACT GATCAAGAAC TTTTCCAATT TCACCGACAA GGGAATATAC 
0241 TACAACGAGA AAGATGATCC CATGTCAGCG CATCTCTTTA ATTTGGATGG ACCCCAGTGG 
0301 CGTTTGCTTA GGAGCAAACT ATCCTCGACA TTCACGTCGG GCAAAATGAA GTTCATGTAT 
0361 CCGACGGTTG TGTCCGTGGC TGAGGAATTT ATGGCTGTGA TGCACGAGAA GGTATCGGAA 
0421 AACTCCATAT TGGACGTTCG GGATCTGGTG GCCAGGTTCA CAGTGGATGT CATCGGAACC 
0481 TGTGCCTTTG GCATCAAATG  
 in silico PCR Fragment
0001 AAGAGGCGTG GCATTCCGTA TGATAAACCC CATCCTCTCA GAGGAAATAT GGAGGGATAT 
0061 AAGAAAACGA GGACCGTTCA CGAAATCCAC CAGGAATACT ACAACAAATA TCGAAATAGC 
0121 AAGGCTCCTT TTGTGGGATT CTATCTGTTT CAGAAGCCCG CCGCATTTGT TATAGATCTG 
0181 GAGCTGGCCA AGCAAATACT GATCAAGAAC TTTTCCAATT TCACCGACAA GGGAATATAC 
0241 TACAACGAGA AAGATGATCC CATGTCAGCG CATCTCTTTA ATTTGGATGG ACCCCAGTGG 
0301 CGTTTGCTTA GGAGCAAACT ATCCTCGACA TTCACGTCGG GCAAAATGAA GTTCATGTAT 
0361 CCGACGGTTG TGTCCGTGGC TGAGGAATTT ATGGCTGTGA TGCACGAGAA GGTATCGGAA 
0421 AACTCCATAT TGGACGTTCG GGATCTGGTG GCCAGGTTCA CAGTGGATGT CATCGGAACC 
0481 TGTGCCTTTG GCATCAAATG  
 Assemble Data

13977R-4.IR_full       1   AAGAGGCGTGGCATTCCGTATGATAAACCCCATCCTCTCAGAGGAAATATGGAGGGATAT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13977R-4.in silico     1   AAGAGGCGTGGCATTCCGTATGATAAACCCCATCCTCTCAGAGGAAATATGGAGGGATAT 60


13977R-4.IR_full       61  AAGAAAACGAGGACCGTTCACGAAATCCACCAGGAATACTACAACAAATATCGAAATAGC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13977R-4.in silico     61  AAGAAAACGAGGACCGTTCACGAAATCCACCAGGAATACTACAACAAATATCGAAATAGC 120


13977R-4.IR_full       121 AAGGCTCCTTTTGTGGGATTCTATCTGTTTCAGAAGCCCGCCGCATTTGTTATAGATCTG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13977R-4.in silico     121 AAGGCTCCTTTTGTGGGATTCTATCTGTTTCAGAAGCCCGCCGCATTTGTTATAGATCTG 180


13977R-4.IR_full       181 GAGCTGGCCAAGCAAATACTGATCAAGAACTTTTCCAATTTCACCGACAAGGGAATATAC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13977R-4.in silico     181 GAGCTGGCCAAGCAAATACTGATCAAGAACTTTTCCAATTTCACCGACAAGGGAATATAC 240


13977R-4.IR_full       241 TACAACGAGAAAGATGATCCCATGTCAGCGCATCTCTTTAATTTGGATGGACCCCAGTGG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13977R-4.in silico     241 TACAACGAGAAAGATGATCCCATGTCAGCGCATCTCTTTAATTTGGATGGACCCCAGTGG 300


13977R-4.IR_full       301 CGTTTGCTTAGGAGCAAACTATCCTCGACATTCACGTCGGGCAAAATGAAGTTCATGTAT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13977R-4.in silico     301 CGTTTGCTTAGGAGCAAACTATCCTCGACATTCACGTCGGGCAAAATGAAGTTCATGTAT 360


13977R-4.IR_full       361 CCGACGGTTGTGTCCGTGGCTGAGGAATTTATGGCTGTGATGCACGAGAAGGTATCGGAA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13977R-4.in silico     361 CCGACGGTTGTGTCCGTGGCTGAGGAATTTATGGCTGTGATGCACGAGAAGGTATCGGAA 420


13977R-4.IR_full       421 AACTCCATATTGGACGTTCGGGATCTGGTGGCCAGGTTCACAGTGGATGTCATCGGAACC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13977R-4.in silico     421 AACTCCATATTGGACGTTCGGGATCTGGTGGCCAGGTTCACAGTGGATGTCATCGGAACC 480


13977R-4.IR_full       481 TGTGCCTTTGGCATCAAATG 500
                           ||||||||||||||||||||
13977R-4.in silico     481 TGTGCCTTTGGCATCAAATG 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_143306.2  CG13977-RA (Cyp6a18), mRNA 
0.41   24  76  99  NM_079025.3  CG10248-RA (Cyp6a8), mRNA 
0   NM_142495.1  CG14299-RA, transcript variant A (CG14299), mRNA 
0   NM_001014640.1  CG14299-RB, transcript variant B (CG14299), mRNA 
0   18  39  NM_078904.1  CG9438-RA (Cyp6a2), mRNA 
0   NM_144381.1  CG15378-RA (lectin-22C), mRNA 
0   NM_140041.2  CG4432-RB, transcript variant B (PGRP-LC), mRNA 
0   NM_168324.2  CG4432-RA, transcript variant A (PGRP-LC), mRNA 
0   NM_206308.2  CG4432-RC, transcript variant C (PGRP-LC), mRNA 
0   NM_080016.2  CG4481-RA (Glu-RIB), mRNA 
0   NM_138189.2  CG6905-RA (CG6905), mRNA 
0   22  NM_079024.2  CG10246-RA (Cyp6a9), mRNA 
0   31  NM_137159.2  CG10247-RA (Cyp6a21), mRNA 
0   NM_001032066.1  CG33677-RB, transcript variant B (CG33677), mRNA 
0   NM_001032065.1  CG17768-RA, transcript variant A (CG17768), mRNA 
0   NM_206803.1  CG1417-RH, transcript variant H (slgA), mRNA 
0   NM_078709.2  CG1417-RE, transcript variant E (slgA), mRNA 
0   NM_167751.1  CG1417-RA, transcript variant A (slgA), mRNA 
0   NM_167752.1  CG1417-RD, transcript variant D (slgA), mRNA 
0   NM_167753.1  CG1417-RB, transcript variant B (slgA), mRNA 
0   NM_167754.1  CG1417-RC, transcript variant C (slgA), mRNA 
0   NM_206805.1  CG1417-RF, transcript variant F (slgA), mRNA 
0   NM_206804.1  CG1417-RG, transcript variant G (slgA), mRNA 
0   NM_130482.2  CG12470-RA (CG12470), mRNA 
0   29  NM_143761.2  CG10241-RA (Cyp6a17), mRNA 
0   NM_170081.1  CG10254-RB, transcript variant B (CG10254), mRNA 
0   NM_142913.1  CG10254-RA, transcript variant A (CG10254), mRNA 
0   NM_206691.2  CG1817-RA, transcript variant A (Ptp10D), mRNA 
0   NM_206690.1  CG1817-RD, transcript variant D (Ptp10D), mRNA 
0   NM_167292.2  CG1817-RB, transcript variant B (Ptp10D), mRNA 

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.