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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 13898R-1 
 Symbol CG13898  Full Name CG13898 
 CG No CG13898  Old CG No CG13898 
 Synonyms CG13898 
 Accession No (Link to NCBI) NM_138214.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGCGAATGACGATCTTCAAGAC 
 Primer Seq. 3'
aatctagaggtaccAATAACGCCATCGCCATCAAC 
 Predicted Fragment Size
396 
 IR fragment full Seq
0001 GCGAATGACG ATCTTCAAGA CATTTGCGAA GCCTTCGAGC TCTGTGATCC TGAGAAGACT 
0061 GGAAGAATCA GAGCAGACGA TTTGGGAGAA GTGATGCGCA CTCTCAGGCC AGAATCACAC 
0121 CGAGTCGGAA ATCTACAGAT ATTCCGAGGG ACTCGAGGGA GACGTCAACG GGTACATACA 
0181 ACTCACTGAT TTCATCGATT TGATGACCAA AATCTACAGC ACGATGGGCA GCAGTGACTA 
0241 TTTGAAGGCA GCATATAATG CCTTCGATTT TGATAAGGAC GGTTTGGTAA CATATGGCGA 
0301 GCTACGTCAC GTTTTTATCA ATCTTGGCGA AAAAATATCC GACGAAGAGT TCAATGAAGT 
0361 GTTTCGTCAG GCTGATGTTG ATGGCGATGG CGTTATT 
 in silico PCR Fragment
0001 GCGAATGACG ATCTTCAAGA CATTTGCGAA GCCTTCGAGC TCTGTGATCC TGAGAAGACT 
0061 GGAAGAATCA GAGCAGACGA TTTGGGAGAA GTGATGCGCA CTCTC-GGCC AGAATCACAC 
0121 CGAGTCGGAA ATCTACAGAT ATTCCGAGGG ACTCGAGGGA GACGTCAACG GGTACATACA 
0181 ACTCACTGAT TTCATCGATT TGATGACCAA AATCTACAGC GCGATGGGCA GCAGTGACTA 
0241 TTTGAAGGCA GCATATAATG CCTTCGATTT TGATAAGGAC GGTTTGGTAA CATATGGCGA 
0301 GCTACGTCAC GTTTTCATCA ATCTTGGCGA AAAAATATCC GACGAAGAGT TCAATGAAGT 
0361 GTTTCGTCAG GCTGATGTTG ATGGCGATGG CGTTATT 
 Assemble Data

13898R-1.IR_full       1   GCGAATGACGATCTTCAAGACATTTGCGAAGCCTTCGAGCTCTGTGATCCTGAGAAGACT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13898R-1.in silico     1   GCGAATGACGATCTTCAAGACATTTGCGAAGCCTTCGAGCTCTGTGATCCTGAGAAGACT 60


13898R-1.IR_full       61  GGAAGAATCAGAGCAGACGATTTGGGAGAAGTGATGCGCACTCTCAGGCCAGAATCACAC 120
                           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
13898R-1.in silico     61  GGAAGAATCAGAGCAGACGATTTGGGAGAAGTGATGCGCACTCTC-GGCCAGAATCACAC 120


13898R-1.IR_full       121 CGAGTCGGAAATCTACAGATATTCCGAGGGACTCGAGGGAGACGTCAACGGGTACATACA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13898R-1.in silico     121 CGAGTCGGAAATCTACAGATATTCCGAGGGACTCGAGGGAGACGTCAACGGGTACATACA 180


13898R-1.IR_full       181 ACTCACTGATTTCATCGATTTGATGACCAAAATCTACAGCACGATGGGCAGCAGTGACTA 240
                           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
13898R-1.in silico     181 ACTCACTGATTTCATCGATTTGATGACCAAAATCTACAGCGCGATGGGCAGCAGTGACTA 240


13898R-1.IR_full       241 TTTGAAGGCAGCATATAATGCCTTCGATTTTGATAAGGACGGTTTGGTAACATATGGCGA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13898R-1.in silico     241 TTTGAAGGCAGCATATAATGCCTTCGATTTTGATAAGGACGGTTTGGTAACATATGGCGA 300


13898R-1.IR_full       301 GCTACGTCACGTTTTTATCAATCTTGGCGAAAAAATATCCGACGAAGAGTTCAATGAAGT 360
                           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
13898R-1.in silico     301 GCTACGTCACGTTTTCATCAATCTTGGCGAAAAAATATCCGACGAAGAGTTCAATGAAGT 360


13898R-1.IR_full       361 GTTTCGTCAGGCTGATGTTGATGGCGATGGCGTTATT 397
                           |||||||||||||||||||||||||||||||||||||
13898R-1.in silico     361 GTTTCGTCAGGCTGATGTTGATGGCGATGGCGTTATT 397

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   378  NM_138214.1  CG13898-RA (CG13898), mRNA 
0   NM_143116.2  CG31300-RA (CG31300), mRNA 
0   NM_143019.2  CG6695-RA, transcript variant A (CG6695), mRNA 
0   NM_206565.1  CG6695-RB, transcript variant B (CG6695), mRNA 
0   NM_176272.1  CG33166-RB, transcript variant B (stet), mRNA 
0   NM_176273.1  CG33166-RA, transcript variant A (stet), mRNA 
0   NM_206753.1  CG9170-RB, transcript variant B (CG9170), mRNA 
0   NM_132867.1  CG9170-RA, transcript variant A (CG9170), mRNA 
0   NM_166129.2  CG18255-RD, transcript variant D (Strn-Mlck), mRNA 
0   NM_166125.2  CG18255-RA, transcript variant A (Strn-Mlck), mRNA 
0   NM_141785.1  CG4706-RA (CG4706), mRNA 
0   NM_057278.3  CG7727-RA (Appl), mRNA 
0   NM_168616.1  CG32147-RA (CG32147), mRNA 
0   NM_001014668.1  CG8318-RD, transcript variant D (Nf1), mRNA 
0   NM_170252.2  CG8318-RC, transcript variant C (Nf1), mRNA 
0   NM_170253.2  CG8318-RB, transcript variant B (Nf1), mRNA 
0   NM_138220.1  CG13889-RA (CG13889), mRNA 
0   NM_078600.2  CG10521-RA (NetB), mRNA 
0   24  NM_057640.2  CG17769-RA (And), mRNA 
0   14  NM_176498.1  CG9297-RA, transcript variant A (CG9297), mRNA 
0   14  NM_176497.1  CG9297-RB, transcript variant B (CG9297), mRNA 
0   NM_169851.1  CG31475-RA (CG31475), mRNA 
0   NM_078494.2  CG3201-RA (Mlc-c), mRNA 
0   10  NM_135525.1  CG5604-RA (CG5604), mRNA 
0   NM_001043206.1  CG41466-RA (CG41466), mRNA 
0   NM_132898.2  CG4394-RC, transcript variant C (Traf3), mRNA 
0   NM_167518.1  CG4394-RB, transcript variant B (Traf3), mRNA 
0   NM_167517.1  CG4394-RA, transcript variant A (Traf3), mRNA 
0   NM_132831.1  CG8184-RB (CG8184), mRNA 
0   NM_057666.3  CG10922-RA, transcript variant A (La), mRNA 

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