Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
temporarily unavailable
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
12491R-2 |
Symbol |
CG12491 |
Full Name |
CG12491 |
CG No |
CG12491 |
Old CG No |
CG12491 |
Synonyms |
CG12491 |
Accession No (Link to NCBI) |
NM_137980.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCCCGAATTCGTCCTGGCCTTT |
Primer Seq. 3' |
aatctagaggtaccACGTTGGCGCCTTCTTCCAGC |
Predicted Fragment Size |
459 |
IR fragment full Seq |
0001 CCCGAATTCG TCCTGGCCTT TGGTTTGGTT GTCCTCGTGG CGACCGTTTA TGGTGGCACC
0061 GACTCATCCT CGAGCGACTC GTCCTCTTCC ACATCACCCA CTTCCAGTTC ATCGACTCCA
0121 TCGACTTCCA GCTCAAGTTC GACACCCAGC TCTTCGTCCT CCACCTCAAC TCCGTCCAGC
0181 AACAGCACNT ACGTCTACTT CGTCCTCCAC TCCTAGCAGC TCTTCTTCCA CTTCGCCCAC
0241 TTCCTCCACC TCATCGACGA CTGCCACAAC CACGGCCCCC TCCACGTCCA GCGACACGTC
0301 CTCCTCCTCC TCGAGCTCCG ACAGCGAGGA GGTGGACAGG CTGAGGCGCA GGCTTCGCAG
0361 GCTCCGGCGG CTGAGGCGTC AGGAGAGGCG CCAGGAGATT CGCCGGGAGA GGCAGCAGGA
0421 AAGGCGCCAG CAGAGTCGTG CTGGAAGAAg GCGCCAACGT |
in silico PCR Fragment |
0001 CCCGAATTCG TCCTGGCCTT TGGTTTGGTT GTCCTCGTGG CGACCGTTTA TGGTGGCACC
0061 GACTCATCCT CGAGCGACTC GTCCTCTTCC ACATCACCCA CTTCCAATTC ATCGACTCCA
0121 TCGACTTCCA GCTCAAGTTC GACACCCAGC TCTTCGTCCT CCACCTCAAC TCCGTCCAGC
0181 AATAGCAC-T ACGTCTACTT CGTCCTCCAC TCCTAGCAGC TCTTCTTCCA CTTCGCCCAC
0241 TTCCTCCACC TCATCGACGA CTGCCACAAC CACGGCCCCC TCCACGTCCA GCGACACGTC
0301 CTCCTCCTCC ACGAGCTCCG ACAGCGAGGA GGTGGACAGG CTGAGGCGCA GGCTTCGCAG
0361 GCTCCGGCGG CTGAGGCGTC AGGAGAGGCG CCAGGAGATT CGCCGGGAGA GGCAGCAGGA
0421 AAGGCGCCAG CAGAGTCGTG CTGGAAGAAG GCGCCAACGT |
Assemble Data |
12491R-2.IR_full 1 CCCGAATTCGTCCTGGCCTTTGGTTTGGTTGTCCTCGTGGCGACCGTTTATGGTGGCACC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12491R-2.in silico 1 CCCGAATTCGTCCTGGCCTTTGGTTTGGTTGTCCTCGTGGCGACCGTTTATGGTGGCACC 60
12491R-2.IR_full 61 GACTCATCCTCGAGCGACTCGTCCTCTTCCACATCACCCACTTCCAGTTCATCGACTCCA 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
12491R-2.in silico 61 GACTCATCCTCGAGCGACTCGTCCTCTTCCACATCACCCACTTCCAATTCATCGACTCCA 120
12491R-2.IR_full 121 TCGACTTCCAGCTCAAGTTCGACACCCAGCTCTTCGTCCTCCACCTCAACTCCGTCCAGC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12491R-2.in silico 121 TCGACTTCCAGCTCAAGTTCGACACCCAGCTCTTCGTCCTCCACCTCAACTCCGTCCAGC 180
12491R-2.IR_full 181 AACAGCACNTACGTCTACTTCGTCCTCCACTCCTAGCAGCTCTTCTTCCACTTCGCCCAC 240
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
12491R-2.in silico 181 AATAGCAC-TACGTCTACTTCGTCCTCCACTCCTAGCAGCTCTTCTTCCACTTCGCCCAC 240
12491R-2.IR_full 241 TTCCTCCACCTCATCGACGACTGCCACAACCACGGCCCCCTCCACGTCCAGCGACACGTC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12491R-2.in silico 241 TTCCTCCACCTCATCGACGACTGCCACAACCACGGCCCCCTCCACGTCCAGCGACACGTC 300
12491R-2.IR_full 301 CTCCTCCTCCTCGAGCTCCGACAGCGAGGAGGTGGACAGGCTGAGGCGCAGGCTTCGCAG 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
12491R-2.in silico 301 CTCCTCCTCCACGAGCTCCGACAGCGAGGAGGTGGACAGGCTGAGGCGCAGGCTTCGCAG 360
12491R-2.IR_full 361 GCTCCGGCGGCTGAGGCGTCAGGAGAGGCGCCAGGAGATTCGCCGGGAGAGGCAGCAGGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12491R-2.in silico 361 GCTCCGGCGGCTGAGGCGTCAGGAGAGGCGCCAGGAGATTCGCCGGGAGAGGCAGCAGGA 420
12491R-2.IR_full 421 AAGGCGCCAGCAGAGTCGTGCTGGAAGAAGGCGCCAACGT 460
||||||||||||||||||||||||||||||||||||||||
12491R-2.in silico 421 AAGGCGCCAGCAGAGTCGTGCTGGAAGAAGGCGCCAACGT 460
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
441 |
0 |
8 |
44 |
NM_001043102.1 |
CG34105-RA (CG34105), mRNA |
100 |
441 |
0 |
8 |
44 |
NM_137980.2 |
CG12491-RA (CG12491), mRNA |
0.45 |
2 |
4 |
3 |
33 |
NM_137979.2 |
CG13560-RA (CG13560), mRNA |
0.45 |
2 |
2 |
4 |
11 |
NM_168441.1 |
CG32071-RA (CG32071), mRNA |
0.22 |
1 |
4 |
2 |
4 |
NM_078683.2 |
CG7103-RA (Pvf1), mRNA |
0 |
0 |
3 |
2 |
9 |
NM_140681.3 |
CG9665-RA (CG9665), mRNA |
0 |
0 |
2 |
14 |
17 |
NM_169134.1 |
CG31556-RA (CG31556), mRNA |
0 |
0 |
2 |
6 |
9 |
NM_135661.2 |
CG6509-RB, transcript variant B (CG6509), mRNA |
0 |
0 |
2 |
6 |
9 |
NM_164967.1 |
CG6509-RA, transcript variant A (CG6509), mRNA |
0 |
0 |
2 |
5 |
3 |
NM_136028.2 |
CG7180-RA (CG7180), mRNA |
0 |
0 |
2 |
4 |
6 |
NM_167857.1 |
CG1200-RA, transcript variant A (Aplip1), mRNA |
0 |
0 |
2 |
4 |
6 |
NM_167856.1 |
CG1200-RB, transcript variant B (Aplip1), mRNA |
0 |
0 |
2 |
4 |
2 |
NM_136627.1 |
CG13740-RA (CG13740), mRNA |
0 |
0 |
2 |
3 |
8 |
NM_057519.3 |
CG17998-RA (Gprk2), mRNA |
0 |
0 |
2 |
3 |
4 |
NM_137034.2 |
CG17064-RA (mars), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_169590.1 |
CG14853-RA, transcript variant A (CG14853), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_142119.2 |
CG14853-RB, transcript variant B (CG14853), mRNA |
0 |
0 |
1 |
7 |
11 |
NM_143328.1 |
CG12875-RA (CG12875), mRNA |
0 |
0 |
1 |
6 |
13 |
NM_058132.2 |
CG11886-RA (Slbp), mRNA |
0 |
0 |
1 |
5 |
8 |
NM_137723.1 |
CG15660-RA (CG15660), mRNA |
0 |
0 |
1 |
5 |
3 |
NM_169750.2 |
CG31266-RA (CG31266), mRNA |
0 |
0 |
1 |
5 |
3 |
NM_143508.1 |
CG7928-RA (CG7928), mRNA |
0 |
0 |
1 |
4 |
11 |
NM_001014545.1 |
CG33519-RB (Unc-89), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_142832.1 |
CG6982-RA (CG6982), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_079606.2 |
CG6819-RA (mbo), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_143365.2 |
CG10009-RA (Noa36), mRNA |
0 |
0 |
1 |
3 |
11 |
NM_001014463.1 |
CG3234-RE, transcript variant E (tim), mRNA |
0 |
0 |
1 |
3 |
11 |
NM_001038783.1 |
CG3234-RF, transcript variant F (tim), mRNA |
0 |
0 |
1 |
3 |
11 |
NM_164540.2 |
CG3234-RD, transcript variant D (tim), mRNA |
0 |
0 |
1 |
3 |
11 |
NM_164542.3 |
CG3234-RB, transcript variant B (tim), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
N |
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+- |
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DB |
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+- |
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DC |
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+- |
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DM |
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+- |
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VM |
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+- |
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VB |
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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++ |
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DM |
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++ |
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VM |
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+ |
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VB |
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Dcompartment |
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Penetrance |
+ |
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