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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
12112R-2 |
Symbol |
CG12112 |
Full Name |
CG12112 |
CG No |
CG12112 |
Old CG No |
CG12112 |
Synonyms |
CG12112 |
Accession No (Link to NCBI) |
NM_132261.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
semi-lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Molnar C, Casado M, López-Varea A, Cruz C, de Celis JF. Genetic annotation of gain-of-function screens using RNA interference and in situ hybridization of candidate genes in the Drosophila wing. Genetics (2012) 192(2) 741-52
[
PubMed ID = 22798488
]
[
RRC reference
]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD. Zyxin links fat signaling to the hippo pathway. PLoS Biol (2011) 9(6) e1000624
[
PubMed ID = 21666802
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTCAAGAGACTTTGCCTCGCCA |
Primer Seq. 3' |
aatctagaggtaccTTCCGAGGGTAGCGTCGGTTC |
Predicted Fragment Size |
470 |
IR fragment full Seq |
0001 TCAAGAGACt TTGCCTCGCC ACCGAGAATA GTCATATCGC AGCCAATGCC ATGCTGCTAA
0061 CAAAGATAGA TGAACTCAAT TCCCAAGTNC CTGTCGCAGC GCGCAGNAAA TCGAAAACTT
0121 GACGAGGGCG GTTAAGACAC TTNCGGAATT CGTTAAGCAG TCGATGAAAA CGACCAAGCC
0181 GAAGGCGAAG GGAAATCCGG ACGATGATTT TCCAATTATG TATGAGGAGG ATCTGGTCGA
0241 AGTGAATCAC AAGATAAGCC AGGACTCCAG GGGGATCTAT ACGAATTNCA TGCGGAAATT
0301 CCTGCGCCAG GGAAGATTAA GCCGCACCAT AAGACTCATT TTCTCCGAGG ACATCCTTCT
0361 GAACTACAAT ATTGATGGGA ATCAGAAAAA GAAAAGACTA AAAGATCACG AACATCTGTT
0421 TCGTTCGCTT ATGAACGCCA TCGGTCAGGT GGAACCGACG CTACCCTCGG AA |
in silico PCR Fragment |
0001 TCAAGAGACT TTGCCTCGCC ACCGAGAATA GTCATATCGC AGCCAATGCC ATGCTGCTAA
0061 CAAAGATAGA TGAACTCAAT TCCCAAGT-C CTGTCGCAGC GCGCAG-AAA TCGAAAACTT
0121 GACGAGGGCG GTTAAGACAC TTACGGAATT CGTTAAGCAG TCGATGAAAA CGACCAAGCC
0181 GAAGGCGAAG GGAAATCCGG ACGATGATTT TCCAATTATG TATGAGGAGG ATCTGGTCGA
0241 AGTGAATCAC AAGATAAGCC AGGACTCCAG GGGGATCTAT ACGAATTCCA TGCGGAAATT
0301 CCTGCGCCAG GGAAGATTAA GCCGCACCAT AAGACTCATT TTCTCCGAGG ACATCCTTCT
0361 GAACTACAAT ATTGATGGGA ATCAGAAAAA GAAAAGACTA AAAGATCACG AACATCTGTT
0421 TCGTTCGCTT ATGAACGCCA TCGGTCAGGT GGAACCGACG CTACCCTCGG AA |
Assemble Data |
12112R-2.IR_full 1 TCAAGAGACTTTGCCTCGCCACCGAGAATAGTCATATCGCAGCCAATGCCATGCTGCTAA 60
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12112R-2.in silico 1 TCAAGAGACTTTGCCTCGCCACCGAGAATAGTCATATCGCAGCCAATGCCATGCTGCTAA 60
12112R-2.IR_full 61 CAAAGATAGATGAACTCAATTCCCAAGTNCCTGTCGCAGCGCGCAGNAAATCGAAAACTT 120
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12112R-2.in silico 61 CAAAGATAGATGAACTCAATTCCCAAGT-CCTGTCGCAGCGCGCAG-AAATCGAAAACTT 120
12112R-2.IR_full 121 GACGAGGGCGGTTAAGACACTTNCGGAATTCGTTAAGCAGTCGATGAAAACGACCAAGCC 180
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12112R-2.in silico 121 GACGAGGGCGGTTAAGACACTTACGGAATTCGTTAAGCAGTCGATGAAAACGACCAAGCC 180
12112R-2.IR_full 181 GAAGGCGAAGGGAAATCCGGACGATGATTTTCCAATTATGTATGAGGAGGATCTGGTCGA 240
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12112R-2.in silico 181 GAAGGCGAAGGGAAATCCGGACGATGATTTTCCAATTATGTATGAGGAGGATCTGGTCGA 240
12112R-2.IR_full 241 AGTGAATCACAAGATAAGCCAGGACTCCAGGGGGATCTATACGAATTNCATGCGGAAATT 300
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12112R-2.in silico 241 AGTGAATCACAAGATAAGCCAGGACTCCAGGGGGATCTATACGAATTCCATGCGGAAATT 300
12112R-2.IR_full 301 CCTGCGCCAGGGAAGATTAAGCCGCACCATAAGACTCATTTTCTCCGAGGACATCCTTCT 360
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12112R-2.in silico 301 CCTGCGCCAGGGAAGATTAAGCCGCACCATAAGACTCATTTTCTCCGAGGACATCCTTCT 360
12112R-2.IR_full 361 GAACTACAATATTGATGGGAATCAGAAAAAGAAAAGACTAAAAGATCACGAACATCTGTT 420
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12112R-2.in silico 361 GAACTACAATATTGATGGGAATCAGAAAAAGAAAAGACTAAAAGATCACGAACATCTGTT 420
12112R-2.IR_full 421 TCGTTCGCTTATGAACGCCATCGGTCAGGTGGAACCGACGCTACCCTCGGAA 472
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12112R-2.in silico 421 TCGTTCGCTTATGAACGCCATCGGTCAGGTGGAACCGACGCTACCCTCGGAA 472
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
452 |
0 |
1 |
4 |
NM_132261.2 |
CG12112-RA (CG12112), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_137427.2 |
CG5036-RA (CG5036), mRNA |
0 |
0 |
1 |
2 |
10 |
NM_080762.2 |
CG15224-RB, transcript variant B (CkIIbeta), mRNA |
0 |
0 |
0 |
12 |
54 |
NM_141762.2 |
CG14692-RA (CG14692), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_169782.1 |
CG31243-RA, transcript variant A (cpo), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_080105.2 |
CG31243-RF, transcript variant F (cpo), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_169781.1 |
CG31243-RE, transcript variant E (cpo), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_078499.3 |
CG4690-RA (Tsp5D), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_139369.1 |
CG7879-RA, transcript variant A (CG7879), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_167896.1 |
CG7879-RB, transcript variant B (CG7879), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_001014632.1 |
CG31243-RG, transcript variant G (cpo), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_080313.2 |
CG9659-RC, transcript variant C (egh), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_166946.1 |
CG9659-RB, transcript variant B (egh), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_080132.2 |
CG11295-RA (l(2)dtl), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_166841.1 |
CG3777-RC, transcript variant C (CG3777), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_130483.2 |
CG3777-RB, transcript variant B (CG3777), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_166840.1 |
CG3777-RA, transcript variant A (CG3777), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_167646.1 |
CG32827-RA (CG32827), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_079114.1 |
CG11290-RA (enok), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_137173.2 |
CG11807-RA (CG11807), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_080029.3 |
CG13761-RB (Bzd), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_141402.1 |
CG15186-RA, transcript variant A (CG15186), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_206436.1 |
CG15186-RC, transcript variant C (CG15186), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_169145.1 |
CG15186-RB, transcript variant B (CG15186), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_001038739.1 |
CG9900-RC, transcript variant C (mit(1)15), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_080162.3 |
CG9900-RB, transcript variant B (mit(1)15), mRNA |
0 |
0 |
0 |
3 |
5 |
NM_134588.1 |
CG1503-RA (CG1503), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_175981.2 |
CG33121-RA (CG33121), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_057244.3 |
CG10501-RA, transcript variant A (amd), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_170033.1 |
CG5248-RC, transcript variant C (loco), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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