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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 11466R-3 
 Symbol Cyp9f2  Full Name Cyp9f2 
 CG No CG11466  Old CG No CG11466 
 Synonyms 9f2, anon-EST:Posey150, CG11466, Cyp9f2 
 Accession No (Link to NCBI) NM_141932.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Dourlen P, Fernandez-Gomez FJ, Dupont C, Grenier-Boley B, Bellenguez C, Obriot H, Caillierez R, Sottejeau Y, Chapuis J, Bretteville A, Abdelfettah F, Delay C, Malmanche N, Soininen H, Hiltunen M, Galas MC, Amouyel P, Sergeant N, Buée L, Lambert JC, Dermaut B.
Functional screening of Alzheimer risk loci identifies PTK2B as an in vivo modulator and early marker of Tau pathology.
Mol Psychiatry (2017) 22(6) 874-883 [ PubMed ID = 27113998 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgAGGAGGCCGTGGACTGTCTTA 
 Primer Seq. 3'
aatctagaggtaccGAAGCACATCAGCACCGCCGA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 AGGAGGCCGT GGACTGTCTT AAGCAGGATG ATTCAAGGGT TCAGGAGAAT GAACTGGACA 
0061 TGAAGGACTA CTGCACACGA TTCACCAATG ATGTGATCGC CTCGACAGCC TTTGGACTGC 
0121 AAGTGAACTC GTTCAAGGAT CGCGAAAATA CCTTCTATCA GATGGGAAAA AAGCTGACCA 
0181 CATTTACATT CCTGCAGAGC ATGNAAGTTC ATGTTGTTCT TCGCATTGAA GGGTCTTAAT 
0241 AAGATCCTTA AGGTCGAGCT TTTCGATAGG AAAAGCACTC AGTATTTCGT GCGTCTGGTG 
0301 CTCGATGCTA TGAAATACCG ACAGGAGCAC AATATTGTAC GTCCCGACAT GATAAACATG 
0361 CTGATGGAGG CTCGTGGTAT CATCCAGACG GAGAAGACCA AGGCATCTGC CGTTCGCGAG 
0421 TGGAGCGAtN GCGACATTGT CGCCCAGTGT TTCGTGTTCT TCTTTGCTGG CTTCGAGACT 
0481 TCGGNGGTGC TGATGTGCTT C 
 in silico PCR Fragment
0001 AGGAGGCCGT GGACTGTCTT AAGCAGGATG ATTCAAGGGT TCAGGAGAAT GAACTGGACA 
0061 TGAAGGACTA CTGCACACGA TTCACCAATG ATGTGATCGC CTCGACAGCC TTTGGACTGC 
0121 AAGTGAACTC GTTCAAGGAT CGCGAAAATA CCTTCTATCA GATGGGAAAA AAGCTGACCA 
0181 CATTTACATT CCTGCAGAGC ATG-AAGTTC ATGTTGTTCT TCGCATTGAA GGGTCTTAAT 
0241 AAGATCCTTA AGGTCGAGCT TTTCGATAGG AAAAGCACTC AGTATTTCGT GCGTCTGGTG 
0301 CTCGATGCTA TGAAATACCG ACAGGAGCAC AATATTGTAC GTCCCGACAT GATAAACATG 
0361 CTGATGGAGG CTCGTGGTAT CATCCAGACG GAGAAGACCA AGGCATCTGC CGTTCGCGAG 
0421 TGGAGCGATC GCGACATTGT CGCCCAGTGT TTCGTGTTCT TCTTTGCTGG CTTCGAGACT 
0481 TCGGCGGTGC TGATGTGCTT C 
 Assemble Data

11466R-3.IR_full       1   AGGAGGCCGTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAATGAACTGGACA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11466R-3.in silico     1   AGGAGGCCGTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAATGAACTGGACA 60


11466R-3.IR_full       61  TGAAGGACTACTGCACACGATTCACCAATGATGTGATCGCCTCGACAGCCTTTGGACTGC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11466R-3.in silico     61  TGAAGGACTACTGCACACGATTCACCAATGATGTGATCGCCTCGACAGCCTTTGGACTGC 120


11466R-3.IR_full       121 AAGTGAACTCGTTCAAGGATCGCGAAAATACCTTCTATCAGATGGGAAAAAAGCTGACCA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11466R-3.in silico     121 AAGTGAACTCGTTCAAGGATCGCGAAAATACCTTCTATCAGATGGGAAAAAAGCTGACCA 180


11466R-3.IR_full       181 CATTTACATTCCTGCAGAGCATGNAAGTTCATGTTGTTCTTCGCATTGAAGGGTCTTAAT 240
                           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
11466R-3.in silico     181 CATTTACATTCCTGCAGAGCATG-AAGTTCATGTTGTTCTTCGCATTGAAGGGTCTTAAT 240


11466R-3.IR_full       241 AAGATCCTTAAGGTCGAGCTTTTCGATAGGAAAAGCACTCAGTATTTCGTGCGTCTGGTG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11466R-3.in silico     241 AAGATCCTTAAGGTCGAGCTTTTCGATAGGAAAAGCACTCAGTATTTCGTGCGTCTGGTG 300


11466R-3.IR_full       301 CTCGATGCTATGAAATACCGACAGGAGCACAATATTGTACGTCCCGACATGATAAACATG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11466R-3.in silico     301 CTCGATGCTATGAAATACCGACAGGAGCACAATATTGTACGTCCCGACATGATAAACATG 360


11466R-3.IR_full       361 CTGATGGAGGCTCGTGGTATCATCCAGACGGAGAAGACCAAGGCATCTGCCGTTCGCGAG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11466R-3.in silico     361 CTGATGGAGGCTCGTGGTATCATCCAGACGGAGAAGACCAAGGCATCTGCCGTTCGCGAG 420


11466R-3.IR_full       421 TGGAGCGATNGCGACATTGTCGCCCAGTGTTTCGTGTTCTTCTTTGCTGGCTTCGAGACT 480
                           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
11466R-3.in silico     421 TGGAGCGATCGCGACATTGTCGCCCAGTGTTTCGTGTTCTTCTTTGCTGGCTTCGAGACT 480


11466R-3.IR_full       481 TCGGNGGTGCTGATGTGCTTC 501
                           |||| ||||||||||||||||
11466R-3.in silico     481 TCGGCGGTGCTGATGTGCTTC 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_141932.2  CG11466-RA, transcript variant A (Cyp9f2), mRNA 
100   482  NM_206478.1  CG11466-RB, transcript variant B (Cyp9f2), mRNA 
77.59   374  83  25  NR_001369.1  CG11466-RB, transcript variant B (Cyp9f2), mRNA, mRNA 
0   10  NM_079025.3  CG10248-RA (Cyp6a8), mRNA 
0   NM_138220.1  CG13889-RA (CG13889), mRNA 
0   NM_164914.1  CG4995-RB, transcript variant B (CG4995), mRNA 
0   NM_135536.2  CG4995-RA, transcript variant A (CG4995), mRNA 
0   NM_164915.1  CG4995-RC, transcript variant C (CG4995), mRNA 
0   10  NR_001388.1  CG4995-RC, transcript variant C (CG4995), mRNA, mRNA 
0   NM_168610.1  CG13457-RA, transcript variant A (CG13457), mRNA 
0   NM_140494.1  CG13457-RB, transcript variant B (CG13457), mRNA 
0   NM_141163.1  CG11226-RA (CG11226), mRNA 
0   NM_079430.2  CG6818-RA (MESR6), mRNA 
0   NM_001015498.1  CG40446-PA (CG40446), mRNA 
0   NM_001042852.1  CG12500-RB, transcript variant B (stnA), mRNA 
0   NM_001042853.1  CG12473-RA, transcript variant A (stnB), mRNA 
0   NM_001042854.1  CG12473-RB, transcript variant B (stnB), mRNA 
0   NM_001042851.1  CG12500-RA, transcript variant A (stnA), mRNA 
0   NM_080359.3  CG11822-RA, transcript variant A (nAcRbeta-21C), mRNA 
0   NM_164386.2  CG11822-RB, transcript variant B (nAcRbeta-21C), mRNA 
0   11  39  NM_136976.1  CG17577-RA (Cyp9h1), mRNA 
0   NM_176309.2  CG33205-RC, transcript variant C (CG33205), mRNA 
0   NM_176311.2  CG33205-RG, transcript variant G (CG33205), mRNA 
0   NM_176308.2  CG33205-RB, transcript variant B (CG33205), mRNA 
0   NM_001038908.1  CG33205-RH, transcript variant H (CG33205), mRNA 
0   NM_176310.2  CG33205-RF, transcript variant F (CG33205), mRNA 
0   NM_140913.1  CG7668-RA, transcript variant A (CG7668), mRNA 
0   NM_168830.1  CG7668-RB, transcript variant B (CG7668), mRNA 
0   16  NM_079126.2  CG3616-RA (Cyp9c1), mRNA 
0   NM_140465.2  CG9311-RA (CG9311), mRNA 

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