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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 11315R-3 
 Symbol CG11315  Full Name CG11315 
 CG No CG11315  Old CG No CG11315 
 Synonyms DmML1A, BcDNA:RH68460, BcDNA:RH04252, BcDNA:GH26608, CG11315 
 Accession No (Link to NCBI) NM_143567.3 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees larval lethal 
 Map Viewer
 Reference
[Please submit your publication] 		 
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgTTGCGTCTGAGTTCGCTCCTG 
 Primer Seq. 3' 
aatctagaggtaccCCACCTTGATGTCGATGGTGA 
 Predicted Fragment Size 
463 
 IR fragment full Seq 
0001 TTGCGTCTGA GTTCGCTCCT GCCTGTCGCC TTTGCTCTGG TGTTGTCATC CGTCTCCGCT 
0061 GAGATAGTCA ACTTTCAGAC TTGCGAAGAT AGTGTGGACT CCTGCTCGAT TAGTCAGGTG 
0121 CGGGTGACGC CCTGTCCGGA AGCCAATGCC AATGCCGCAT GCCACATTCG CCGGAGGCAC 
0181 CGCTTCACGA TGAGCTTCGA CTTTACGCCC CACTTCGATG CGGACACCCT GGTGGCCAGC 
0241 TTGGGCTGGG CCAAGAGCGA GAACGTGGAG CTGCCCCTGC TTACCATGGA CCAGGAGGCC 
0301 TGCAAGTACA CCACCTGCCC CGTGAGATCC GGAGTCACCC AGACCTACAC CAACAACATG 
0361 CCCGCCGACG CCAGGTTCCC GCTGAGTCCA TACACCATCC GTTGGGCCCT GAAGGATCCG 
0421 GTTTCCCAGA AACGTTGCTG CTTCACCATC GACATCAAGG TGG 
 in silico PCR Fragment 
0001 TTGCGTCTGA GTTCGCTCCT GCCTGTCGCC TTTGCTCTGG TGTTGTCATC CGTCTCCGCT 
0061 GAGATAGTCA ACTTTCAGAC TTGCGAAGAT AGTGTGGACT CCTGCTCGAT TAGTCAGGTG 
0121 CGGGTGACGC CCTGTCCGGA AGCCAATGCC AATGCCGCAT GCCACATTCG CCGGAGGCAC 
0181 CGCTTCACGA TGAGCTTCGA CTTTACGCCC CACTTCGATG CGGACACCCT GGTGGCCAGC 
0241 TTGGGCTGGG CCAAGAGCGA GAACGTGGAG CTGCCCCTGC TTACCATGGA CCAGGAGGCC 
0301 TGCAAGTACA CCACCTGCCC CGTGAGATCC GGAGTCACCC AGACCTACAC CAACAACATG 
0361 CCCGCCGACG CCAGGTTCCC GCTGAGTCCA TACACCATCC GTTGGGCCCT GAAGGATCCG 
0421 GTTTCCCAGA AACGTTGCTG CTTCACCATC GACATCAAGG TGG 
 Assemble Data 

11315R-3.IR_full       1   TTGCGTCTGAGTTCGCTCCTGCCTGTCGCCTTTGCTCTGGTGTTGTCATCCGTCTCCGCT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11315R-3.in silico     1   TTGCGTCTGAGTTCGCTCCTGCCTGTCGCCTTTGCTCTGGTGTTGTCATCCGTCTCCGCT 60


11315R-3.IR_full       61  GAGATAGTCAACTTTCAGACTTGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11315R-3.in silico     61  GAGATAGTCAACTTTCAGACTTGCGAAGATAGTGTGGACTCCTGCTCGATTAGTCAGGTG 120


11315R-3.IR_full       121 CGGGTGACGCCCTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCAC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11315R-3.in silico     121 CGGGTGACGCCCTGTCCGGAAGCCAATGCCAATGCCGCATGCCACATTCGCCGGAGGCAC 180


11315R-3.IR_full       181 CGCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTGGTGGCCAGC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11315R-3.in silico     181 CGCTTCACGATGAGCTTCGACTTTACGCCCCACTTCGATGCGGACACCCTGGTGGCCAGC 240


11315R-3.IR_full       241 TTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCTTACCATGGACCAGGAGGCC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11315R-3.in silico     241 TTGGGCTGGGCCAAGAGCGAGAACGTGGAGCTGCCCCTGCTTACCATGGACCAGGAGGCC 300


11315R-3.IR_full       301 TGCAAGTACACCACCTGCCCCGTGAGATCCGGAGTCACCCAGACCTACACCAACAACATG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11315R-3.in silico     301 TGCAAGTACACCACCTGCCCCGTGAGATCCGGAGTCACCCAGACCTACACCAACAACATG 360


11315R-3.IR_full       361 CCCGCCGACGCCAGGTTCCCGCTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11315R-3.in silico     361 CCCGCCGACGCCAGGTTCCCGCTGAGTCCATACACCATCCGTTGGGCCCTGAAGGATCCG 420


11315R-3.IR_full       421 GTTTCCCAGAAACGTTGCTGCTTCACCATCGACATCAAGGTGG 463
                           |||||||||||||||||||||||||||||||||||||||||||
11315R-3.in silico     421 GTTTCCCAGAAACGTTGCTGCTTCACCATCGACATCAAGGTGG 463



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   364  0  0  0  NM_170521.2  CG11315-RB, transcript variant B (CG11315), mRNA 
95.05   346  3  2  2  NM_143567.3  CG11315-RA, transcript variant A (CG11315), mRNA 
3.57   13  65  37  33  NM_143566.1  CG11314-RA (CG11314), mRNA 
0   0  2  4  3  NM_141997.1  CG11668-RA (CG11668), mRNA 
0   0  1  4  5  NM_142092.2  CG14840-RA (CG14840), mRNA 
0   0  1  3  7  NM_079877.2  CG17245-RA (plexB), mRNA 
0   0  1  3  3  NM_137414.2  CG4996-RA (CG4996), mRNA 
0   0  1  3  3  NM_206178.1  CG8201-RA, transcript variant A (par-1), mRNA 
0   0  1  3  3  NM_206177.1  CG8201-RB, transcript variant B (par-1), mRNA 
0   0  1  3  3  NM_206172.1  CG8201-RG, transcript variant G (par-1), mRNA 
0   0  1  3  2  NM_206173.2  CG8201-RC, transcript variant C (par-1), mRNA 
0   0  1  3  2  NM_206176.2  CG8201-RD, transcript variant D (par-1), mRNA 
0   0  1  3  2  NM_001014541.1  CG8201-RM, transcript variant M (par-1), mRNA 
0   0  1  3  2  NM_206175.2  CG8201-RF, transcript variant F (par-1), mRNA 
0   0  1  3  2  NM_206174.2  CG8201-RE, transcript variant E (par-1), mRNA 
0   0  1  3  2  NM_206170.2  CG8201-RI, transcript variant I (par-1), mRNA 
0   0  1  3  2  NM_206171.2  CG8201-RH, transcript variant H (par-1), mRNA 
0   0  1  3  2  NM_001014540.1  CG8201-RN, transcript variant N (par-1), mRNA 
0   0  1  3  2  NM_001014542.1  CG8201-RL, transcript variant L (par-1), mRNA 
0   0  1  3  2  NM_206169.2  CG8201-RJ, transcript variant J (par-1), mRNA 
0   0  1  3  2  NM_206168.2  CG8201-RO, transcript variant O (par-1), mRNA 
0   0  1  2  3  NM_135557.2  CG5188-RA (CG5188), mRNA 
0   0  1  2  2  NM_132934.2  CG4756-RA (CG4756), mRNA 
0   0  0  6  7  NM_078559.2  CG18085-RA (sev), mRNA 
0   0  0  6  3  NM_079814.2  CG5502-RA (RpL4), mRNA 
0   0  0  5  3  NM_132791.2  CG12608-RA (CG12608), mRNA 
0   0  0  5  2  NM_001043081.1  CG11798-RD, transcript variant D (chn), mRNA 
0   0  0  4  7  NM_143360.2  CG1345-RA (Gfat2), mRNA 
0   0  0  4  6  NM_078544.2  CG1689-RA (lz), mRNA 
0   0  0  4  3  NM_078904.1  CG9438-RA (Cyp6a2), mRNA 

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