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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 10700R-1 
 Symbol CG10700  Full Name CG10700 
 CG No CG10700  Old CG No CG10700 
 Synonyms CG10700 
 Accession No (Link to NCBI) NM_136098.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATCTGCTCATTCTCGGCACTG 
 Primer Seq. 3'
aatctagaggtaccATCGACGATCTGACACCGACA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ATCTGCTCAT TCTCGGCACT GGTTGTCAGT GCAACACGGA TTTTCTCCAG CGGAGTGGTA 
0061 TAAACATCAA TCCCAATGGC TCCGTGGATG TTAACGACTT TCTGCAGACT AAAGTACGCA 
0121 ATGTTTATGT GGGCGGGGAT ATAGCCAATG CATATATCTT GGGTGGGTTT CCAGATCGAG 
0181 TAAATATAAG CCACTATGGA TTGGCGCAAT ACCACGGACG CATTGCTGCA CTGAACATGA 
0241 GTGGCCACAT TGCCAAACTG GAAGCCATTC CTTTTTTCTA CACCGTGATA TNTCGGCAGG 
0301 GCCTTTCGCT CCGCAGGATA TGGACCTTTC AAGGACGTTG TCATCGACGG AAGTCTCGAG 
0361 GATTTGCAGT TCGTAGCCTA CTTCTTGGAT GACTACGACA AGGTGACTGC AGTGGCATCC 
0421 TGCGGTCGGG ACCCCATGGT TGCCCAGTTT GCCGAACTGG TGTCGCAGGG AAAAGAATTG 
0481 TGTCGGTGTC AGATCGTCGA T 
 in silico PCR Fragment
0001 ATCTGCTCAT TCTCGGCACT GGTTGTCAGT GCAACACGGA TTTTCTCCAG CGGAGTGGTA 
0061 TAAACATCAA TCCCAATGGC TCCGTGGATG TTAACGACTT TCTGCAGACT AAAGTACGCA 
0121 ATGTTTATGT GGGCGGGGAT ATAGCCAATG CATATATCTT GGGTGGGTTT CCAGATCGAG 
0181 TAAATATAAG CCACTATGGA TTGGCGCAAT ACCACGGACG CATTGCTGCA CTGAACATGA 
0241 GTGGCCACAT TGCCAAACTG GAAGCCATTC CTTTTTTCTA CACCGTGATA T-TCGGCAGG 
0301 GCCTTTCGCT CCGCAGGATA TGGACCTTTC AAGGACGTTG TCATCGACGG AAGTCTCGAG 
0361 GATTTGCAGT TCGTAGCCTA CTTCTTTGAT GACTACGACA AGGTGACTGC AGTGGCATCC 
0421 TGCGGTCGGG ACCCCATGGT TGCCCAGTTT GCCGAACTGG TGTCGCAGGG AAAAGAATTG 
0481 TGTCGGTGTC AGATCGTCGA T 
 Assemble Data

10700R-1.IR_full       1   ATCTGCTCATTCTCGGCACTGGTTGTCAGTGCAACACGGATTTTCTCCAGCGGAGTGGTA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10700R-1.in silico     1   ATCTGCTCATTCTCGGCACTGGTTGTCAGTGCAACACGGATTTTCTCCAGCGGAGTGGTA 60


10700R-1.IR_full       61  TAAACATCAATCCCAATGGCTCCGTGGATGTTAACGACTTTCTGCAGACTAAAGTACGCA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10700R-1.in silico     61  TAAACATCAATCCCAATGGCTCCGTGGATGTTAACGACTTTCTGCAGACTAAAGTACGCA 120


10700R-1.IR_full       121 ATGTTTATGTGGGCGGGGATATAGCCAATGCATATATCTTGGGTGGGTTTCCAGATCGAG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10700R-1.in silico     121 ATGTTTATGTGGGCGGGGATATAGCCAATGCATATATCTTGGGTGGGTTTCCAGATCGAG 180


10700R-1.IR_full       181 TAAATATAAGCCACTATGGATTGGCGCAATACCACGGACGCATTGCTGCACTGAACATGA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10700R-1.in silico     181 TAAATATAAGCCACTATGGATTGGCGCAATACCACGGACGCATTGCTGCACTGAACATGA 240


10700R-1.IR_full       241 GTGGCCACATTGCCAAACTGGAAGCCATTCCTTTTTTCTACACCGTGATATNTCGGCAGG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
10700R-1.in silico     241 GTGGCCACATTGCCAAACTGGAAGCCATTCCTTTTTTCTACACCGTGATAT-TCGGCAGG 300


10700R-1.IR_full       301 GCCTTTCGCTCCGCAGGATATGGACCTTTCAAGGACGTTGTCATCGACGGAAGTCTCGAG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10700R-1.in silico     301 GCCTTTCGCTCCGCAGGATATGGACCTTTCAAGGACGTTGTCATCGACGGAAGTCTCGAG 360


10700R-1.IR_full       361 GATTTGCAGTTCGTAGCCTACTTCTTGGATGACTACGACAAGGTGACTGCAGTGGCATCC 420
                           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
10700R-1.in silico     361 GATTTGCAGTTCGTAGCCTACTTCTTTGATGACTACGACAAGGTGACTGCAGTGGCATCC 420


10700R-1.IR_full       421 TGCGGTCGGGACCCCATGGTTGCCCAGTTTGCCGAACTGGTGTCGCAGGGAAAAGAATTG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
10700R-1.in silico     421 TGCGGTCGGGACCCCATGGTTGCCCAGTTTGCCGAACTGGTGTCGCAGGGAAAAGAATTG 480


10700R-1.IR_full       481 TGTCGGTGTCAGATCGTCGAT 501
                           |||||||||||||||||||||
10700R-1.in silico     481 TGTCGGTGTCAGATCGTCGAT 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_136098.1  CG10700-RA (CG10700), mRNA 
0   NM_135983.1  CG15136-RA (CG15136), mRNA 
0   NM_169089.2  CG1250-RB, transcript variant B (sec23), mRNA 
0   NM_169088.1  CG1250-RA, transcript variant A (sec23), mRNA 
0   13  24  NM_166925.1  CG4199-RA, transcript variant A (CG4199), mRNA 
0   13  24  NM_166922.1  CG4199-RB, transcript variant B (CG4199), mRNA 
0   13  24  NM_130620.2  CG4199-RD, transcript variant D (CG4199), mRNA 
0   13  24  NM_166923.1  CG4199-RC, transcript variant C (CG4199), mRNA 
0   13  24  NM_166921.1  CG4199-RE, transcript variant E (CG4199), mRNA 
0   13  24  NM_166924.1  CG4199-RF, transcript variant F (CG4199), mRNA 
0   NM_137167.2  CG7639-RA, transcript variant A (CG7639), mRNA 
0   NM_206116.1  CG7639-RB, transcript variant B (CG7639), mRNA 
0   NM_131982.1  CG3323-RA (CG3323), mRNA 
0   NM_079335.4  CG12478-RB, transcript variant B (bru-3), mRNA 
0   NM_168557.1  CG12478-RA, transcript variant A (bru-3), mRNA 
0   NM_164487.1  CG9885-RD, transcript variant D (dpp), mRNA 
0   NM_164486.1  CG9885-RC, transcript variant C (dpp), mRNA 
0   NM_165345.1  CG9331-RA, transcript variant A (CG9331), mRNA 
0   NM_136218.2  CG9331-RB, transcript variant B (CG9331), mRNA 
0   NM_206015.1  CG9331-RE, transcript variant E (CG9331), mRNA 
0   NM_176067.1  CG9331-RD, transcript variant D (CG9331), mRNA 
0   NM_176066.2  CG9331-RC, transcript variant C (CG9331), mRNA 
0   NM_132532.2  CG15739-RA (CG15739), mRNA 
0   NM_141794.1  CG6689-RA (CG6689), mRNA 
0   NM_058145.3  CG2707-RA (fs(1)Ya), mRNA 
0   NM_169177.1  CG2507-RB, transcript variant B (sas), mRNA 
0   NM_138040.2  CG3231-RA (CG3231), mRNA 
0   NM_132114.1  CG14442-RA (CG14442), mRNA 
0   NM_137214.3  CG30084-RA, transcript variant A (CG30084), mRNA 
0   NM_139988.3  CG5978-RA (CG5978), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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