SNP information in laboratory strains of Drosophila ananassae and its relatives (ver. 1, 2008.3.31, English 2009.09.09) |
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Single nucleotide polymorphisms (SNPs) of a total 51 strains (standard
strains and mutant strains) of D. ananasssae and its relatives
maintained in KYORIN-Fly were searched for by partial sequencing of
selected 19 loci (11 on X chromosome, and 8 on the 2nd chromosome).
Methods and Results
The sequencing information obtained was compared with the
D. ananassae genome sequence on Assembly/Alignment/Annotation of 12 related Drosophila
species(1) and SNPs were searched for using novoSNP(2).
References
(1)
http://rana.lbl.gov/drosophila/ananassae.html
(2) Weckx, S., Del-Favero, J., Rademaker, R., Claes,
L., Cruts, M., De Jonghe, P., Van Broeckhove, C., & De Rijk, P., 2005.
novoSNP, a novel computational tool for sequence variation discovery.
Genome
Research 15: 436-442.
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Kyorin University All rights reserved. |
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The KYORIN-Fly is part of the National BioResource Project started in 2002. |
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