|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR46
(D)
,
OCR46-10
(D)
,
OCR46-11
(D)
,
OCR46-9
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rlmH
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rlmH
Search strains by all related name:
rlmH b0636 ECK0629 JW0631 ybeA
|
General information (Go to Linear View: )
|
|
Gene Name
|
rlmH
|
|
Alternative name
|
b0636,ECK0629,JW0631,ybeA
|
|
Location, Length
|
667,471 - 667,938
(
-
)
;
14.39
min
;
468
(bp) ,
155
(aa)
|
|
Product
|
23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent
|
|
Operon Name
|
ybeB-rlmH-mrdAB-rlpA
|
|
Note
|
|
|
Function
|
enzyme; rRNA modification
|
|
Gene Ontology
|
GO:0005515
;
protein binding ( ybeA )
|
|
PID
|
1786855
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YBEA_ECOLI
(
P05850
)
|
|
- Protein name
|
Hypothetical UPF0247 protein ybeA.
|
|
- Synonyms
|
|
|
- Gene name
|
OrderedLocusNames=b0636, c0727, z0782, ECs0674, SF0645, S0667;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ybeA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, X-Ray Structure Of Ybea From E.Coli. Northeast Structural Genomics Research Consortium (Nesg) Target Er45
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
UPF0247 protein ybeA
|
|
PSI-BLAST
|
UPF0247 protein HI0033
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein Z0782 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MKLQLVAVGT KMPDWVQTGF TEYLRRFPKD MPFELIEIPA GKRGKNADIK RILDKEGEQM LAAAGKNRIV
0071 TLDIPGKPWD TPQLAAELER WKLDGRDVSL LIGGPEGLSP ACKAAAEQSW SLSALTLPHP LVRVLVAESL
0141 YRAWSITTNH PYHRE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cgccgactgg attgtcgtgg atttgggcga
-070 tgtgattgtc catgtcatgc aggaagagag ccgtcgcctg tatgaactgg aaaaactctg gagttaatgc
0001 gtgaagctgc aacttgtcgc cgtgggaacg aaaatgccgg actgggtaca aaccggtttt accgagtacc
0071 tgcgtcgttt tccgaaagat atgcccttcg agctgattga aattccggcc ggaaaacgcg gcaagaatgc
0141 ggacatcaag cgcatactcg acaaagaggg tgagcagatg ttggcggccg caggcaaaaa ccgcattgtc
0211 accctcgata ttccaggcaa gccctgggat acgccgcagt tagccgctga gctggaacgc tggaagctgg
0281 atggtcgcga cgtcagtcta ctgattggcg ggcctgaagg gttgtcgcct gcctgtaaag cggcggctga
0351 gcagagctgg tcgctgtcgg cgcttaccct cccccatccg ctggttcgcg tgctggtcgc agagagtctg
0421 taccgggcgt ggagcatcac caccaaccat ccttatcacc gtgagtgata agggagcttt gagtagaaaa
0491 cgcagcggat gaaactacag aactcttttc gcgactatac ggcagagtcc gcgctgtttg tgcgccgggc
0561 gctggtcg
|
